PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001841
Description: Zinc finger, RING-type

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	13	CH_bdi_215	6	7	0.00000292338
Brachypodium distachyon	Bd2	13	CH_bdi_275	5	5	0.0000268574
Brachypodium distachyon	Bd2	13	CH_bdi_344	5	6	0.000159022
Carica papaya	supercontig_81	13	CH_cpa_140	5	5	0.00000334704
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_555	5	7	0.0000212964
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_719	4	4	0.000144557
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_181	8	11	0.0000000000585549
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_179	10	25	0.0000000000529057
Oryza sativa ssp. indica	Chr06	14	CH_osaindica_76	10	25	0.0000000000529057
Oryza sativa ssp. japonica	1	13	CH_osa_567	5	7	0.0000427623
Oryza sativa ssp. japonica	2	13	CH_osa_718	4	4	0.000253169
Oryza sativa ssp. japonica	2	13	CH_osa_150	9	14	0.0000000000172322
Oryza sativa ssp. japonica	6	13	CH_osa_113	14	52	0.000000000000396637
Oryza sativa ssp. japonica	2	14	CH_osa_98	10	39	0.0000000369817
Oryza sativa ssp. japonica	6	14	CH_osa_73	14	52	0.000000000000396637
Setaria italica	scaffold_1	13	CH_sit_81	13	23	0.00000000000000613261
Setaria italica	scaffold_1	13	CH_sit_775	4	4	0.000882229
Setaria italica	scaffold_4	13	CH_sit_30	15	20	1.31454e-20
Setaria italica	scaffold_7	13	CH_sit_427	5	5	0.0000110173
Setaria italica	scaffold_1	14	CH_sit_42	13	23	0.00000000000000613261
Setaria italica	scaffold_4	14	CH_sit_29	15	20	1.31454e-20
Solanum lycopersicum	ch07	13	CH_sly_413	6	9	0.000010492
Solanum lycopersicum	ch09	13	CH_sly_414	6	9	0.000010492
Solanum lycopersicum	ch11	13	CH_sly_412	5	5	0.0000104292
Sorghum bicolor	chr_10	13	CH_sbi_122	12	28	0.0000000000147911
Sorghum bicolor	chr_4	13	CH_sbi_72	11	13	0.00000000000000356779
Sorghum bicolor	chr_5	13	CH_sbi_166	9	15	0.00000000138919
Sorghum bicolor	chr_5	13	CH_sbi_391	5	5	0.0000116576
Sorghum bicolor	chr_5	13	CH_sbi_507	6	12	0.000127909
Sorghum bicolor	chr_10	14	CH_sbi_47	12	28	0.0000000000147911
Sorghum bicolor	chr_4	14	CH_sbi_39	11	13	0.00000000000000356779
Vitis vinifera	chr1	13	CH_vvi_358	5	5	0.00000332116
Vitis vinifera	chr7	13	CH_vvi_443	5	7	0.0000685422
Zea mays	5	13	CH_zma_158	6	6	0.00000022415
Zea mays	9	13	CH_zma_148	8	14	0.000000109932

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V