PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001611
Description: Leucine-rich repeat

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_477	4	4	0.000295895
Arabidopsis thaliana	2	13	CH_ath_420	5	8	0.000155495
Arabidopsis thaliana	5	13	CH_ath_478	4	4	0.000295895
Arabidopsis thaliana	5	15	CH_ath_14	4	4	0.0000941978
Brachypodium distachyon	Bd2	13	CH_bdi_226	5	5	0.00000473921
Musa acuminata	chr2	13	CH_mac_47	13	52	0.000000000476729
Musa acuminata	chr3	13	CH_mac_3	16	25	2.50181e-21
Musa acuminata	chr4	13	CH_mac_160	6	9	0.00000533115
Musa acuminata	chrUn_random	13	CH_mac_19	9	10	0.000000000000822964
Musa acuminata	chr2	14	CH_mac_5	13	52	0.000000000476729
Musa acuminata	chr3	14	CH_mac_3	16	25	2.50181e-21
Musa acuminata	chrUn_random	15	CH_mac_2	7	10	0.0000000245558
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_223	11	34	0.000000000516692
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_38	22	75	2.23467e-22
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_35	16	24	9.11458e-23
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_454	6	9	0.0000028224
Oryza sativa ssp. indica	Chr12	13	CH_osaindica_935	7	31	0.000684025
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_80	11	34	0.000000000516692
Oryza sativa ssp. indica	Chr02	14	CH_osaindica_74	21	196	0.0000000000151052
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_33	16	24	9.11458e-23
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_35	23	86	1.66888e-22
Oryza sativa ssp. indica	Chr11	15	CH_osaindica_36	7	33	0.0000470025
Oryza sativa ssp. indica	Chr11	16	CH_osaindica_2	10	113	0.0000857904
Oryza sativa ssp. japonica	1	13	CH_osa_791	6	20	0.000553257
Oryza sativa ssp. japonica	11	13	CH_osa_38	15	22	3.25988e-22
Oryza sativa ssp. japonica	2	13	CH_osa_9	24	39	4.83129e-36
Oryza sativa ssp. japonica	11	14	CH_osa_36	15	22	3.25988e-22
Oryza sativa ssp. japonica	2	14	CH_osa_100	17	205	0.0000000871033
Oryza sativa ssp. japonica	2	14	CH_osa_10	24	39	4.83129e-36
Physcomitrella patens	scaffold_107	13	CH_ppa_4	8	8	0.0000000000016068
Physcomitrella patens	scaffold_2	13	CH_ppa_10	6	6	0.0000000192275
Physcomitrella patens	scaffold_107	14	CH_ppa_1	11	27	0.000000000013638
Physcomitrella patens	scaffold_2	15	CH_ppa_19	4	5	0.000695272
Populus trichocarpa	Chr03	13	CH_ptr_281	13	44	0.0000000329802
Populus trichocarpa	Chr04	13	CH_ptr_337	8	12	0.00000024621
Populus trichocarpa	Chr05	13	CH_ptr_330	9	17	0.000000206968
Populus trichocarpa	Chr05	13	CH_ptr_222	17	77	0.00000000203708
Populus trichocarpa	Chr11	13	CH_ptr_633	12	69	0.000198637
Populus trichocarpa	Chr18	13	CH_ptr_376	8	13	0.000000629722
Populus trichocarpa	scaffold_24	13	CH_ptr_427	9	22	0.00000389778
Populus trichocarpa	Chr03	14	CH_ptr_92	13	44	0.0000000329802
Populus trichocarpa	Chr05	14	CH_ptr_82	22	103	0.00000000000084254
Populus trichocarpa	Chr11	14	CH_ptr_104	10	38	0.0000525949
Populus trichocarpa	Chr15	14	CH_ptr_98	10	26	0.000000722248
Populus trichocarpa	Chr18	14	CH_ptr_101	11	43	0.0000108852
Setaria italica	scaffold_6	13	CH_sit_490	5	6	0.0000544918
Setaria italica	scaffold_6	13	CH_sit_241	7	9	0.0000000465287
Setaria italica	scaffold_8	13	CH_sit_182	7	7	0.00000000132
Setaria italica	scaffold_8	14	CH_sit_49	12	42	0.00000000250271
Solanum lycopersicum	ch01	13	CH_sly_649	7	25	0.000325103
Solanum lycopersicum	ch01	13	CH_sly_695	5	8	0.000350105
Solanum lycopersicum	ch02	13	CH_sly_254	13	73	0.0000000699265
Solanum lycopersicum	ch02	14	CH_sly_61	14	90	0.0000000681735
Solanum lycopersicum	ch12	14	CH_sly_58	11	37	0.00000000809034
Sorghum bicolor	chr_5	13	CH_sbi_583	5	8	0.000235843
Sorghum bicolor	chr_8	13	CH_sbi_629	4	4	0.000415256
Vitis vinifera	chr12	13	CH_vvi_421	9	27	0.0000260989
Vitis vinifera	chr16	13	CH_vvi_569	9	34	0.000259638
Vitis vinifera	chr18	13	CH_vvi_387	14	79	0.00000655433
Vitis vinifera	chr18	13	CH_vvi_293	11	34	0.00000049977
Vitis vinifera	chr18	13	CH_vvi_426	6	8	0.0000316761
Vitis vinifera	chr5	13	CH_vvi_498	6	9	0.000093506
Vitis vinifera	chr16	14	CH_vvi_91	17	162	0.000344047
Vitis vinifera	chr18	14	CH_vvi_55	35	295	0.000000000000132582
Zea mays	10	13	CH_zma_173	5	5	0.000000606338

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V