PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001480
Description: Bulb-type lectin domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd5	13	CH_bdi_9	12	19	1.0127e-21
Brachypodium distachyon	Bd5	13	CH_bdi_328	4	7	0.00010272
Brachypodium distachyon	Bd5	14	CH_bdi_8	12	19	1.0127e-21
Carica papaya	supercontig_27	13	CH_cpa_34	7	15	0.00000000000782439
Musa acuminata	chr1	13	CH_mac_55	5	6	0.00000000229334
Musa acuminata	chr1	15	CH_mac_3	4	5	0.000000652908
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_414	5	9	0.000000999175
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_243	7	18	0.00000000172975
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_667	4	7	0.000104336
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_865	5	26	0.000502258
Oryza sativa ssp. japonica	4	13	CH_osa_584	4	7	0.0000666101
Oryza sativa ssp. japonica	4	13	CH_osa_456	5	14	0.00000893263
Oryza sativa ssp. japonica	6	13	CH_osa_457	4	5	0.00000955231
Populus trichocarpa	Chr01	13	CH_ptr_126	9	13	0.000000000000186562
Populus trichocarpa	Chr01	13	CH_ptr_181	7	8	0.0000000000666132
Populus trichocarpa	Chr03	13	CH_ptr_288	6	8	0.0000000408627
Populus trichocarpa	Chr11	13	CH_ptr_750	4	6	0.000670558
Populus trichocarpa	Chr11	14	CH_ptr_1	45	61	2.32754e-84
Populus trichocarpa	Chr01	15	CH_ptr_18	4	8	0.0000144031
Setaria italica	scaffold_4	13	CH_sit_435	4	6	0.0000155007
Solanum lycopersicum	ch01	13	CH_sly_295	6	19	0.000000341819
Solanum lycopersicum	ch04	13	CH_sly_44	10	13	1.53139e-19
Solanum lycopersicum	ch08	13	CH_sly_768	3	3	0.000705513
Solanum lycopersicum	ch04	14	CH_sly_33	10	13	1.53139e-19
Solanum lycopersicum	ch07	14	CH_sly_66	11	251	0.0000038558
Solanum lycopersicum	ch04	15	CH_sly_28	4	12	0.0000589252
Sorghum bicolor	chr_6	13	CH_sbi_31	11	16	5.82353e-21
Sorghum bicolor	chr_6	14	CH_sbi_30	11	16	5.82353e-21
Vitis vinifera	chr12	13	CH_vvi_276	6	19	0.000000287349
Vitis vinifera	chr18	13	CH_vvi_65	9	11	9.99019e-18
Vitis vinifera	chr6	13	CH_vvi_334	4	4	0.00000155147
Vitis vinifera	chr8	13	CH_vvi_218	5	6	0.0000000248017
Vitis vinifera	chr8	15	CH_vvi_37	3	3	0.000090453

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V