PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001461
Description: Aspartic peptidase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	13	CH_ath_222	4	4	0.000000688581
Brachypodium distachyon	Bd2	13	CH_bdi_206	4	4	0.0000021101
Carica papaya	supercontig_39	13	CH_cpa_300	3	3	0.00011927
Carica papaya	supercontig_39	15	CH_cpa_10	3	3	0.0000701257
Musa acuminata	chr1	13	CH_mac_386	3	3	0.000333082
Musa acuminata	chr3	13	CH_mac_170	4	6	0.0000100285
Musa acuminata	chr1	15	CH_mac_19	3	3	0.000251205
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_53	10	13	8.13127e-20
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_189	7	14	0.0000000000807678
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_505	4	5	0.00000927
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_659	6	46	0.0000887617
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_245	7	20	0.00000000180216
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_982	3	3	0.000781025
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_84	9	14	2.49662e-16
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_48	10	13	8.13127e-20
Oryza sativa ssp. indica	Chr06	15	CH_osaindica_79	4	15	0.000440812
Oryza sativa ssp. japonica	1	13	CH_osa_98	8	12	0.0000000000000185115
Oryza sativa ssp. japonica	10	13	CH_osa_33	11	13	2.94701e-23
Oryza sativa ssp. japonica	11	13	CH_osa_772	4	11	0.000504438
Oryza sativa ssp. japonica	3	13	CH_osa_349	5	9	0.00000043525
Oryza sativa ssp. japonica	5	13	CH_osa_398	4	4	0.00000154817
Oryza sativa ssp. japonica	6	13	CH_osa_483	5	16	0.0000148916
Oryza sativa ssp. japonica	7	13	CH_osa_214	6	10	0.00000000161763
Oryza sativa ssp. japonica	8	13	CH_osa_810	3	3	0.000683257
Oryza sativa ssp. japonica	10	14	CH_osa_33	11	13	2.94701e-23
Populus trichocarpa	Chr06	13	CH_ptr_714	3	3	0.000467215
Populus trichocarpa	Chr18	13	CH_ptr_172	6	7	0.0000000000343516
Populus trichocarpa	Chr19	13	CH_ptr_139	7	10	0.00000000000125649
Setaria italica	scaffold_2	13	CH_sit_493	4	6	0.0000554607
Setaria italica	scaffold_2	13	CH_sit_385	4	4	0.00000371617
Setaria italica	scaffold_3	13	CH_sit_446	4	5	0.0000185338
Setaria italica	scaffold_4	13	CH_sit_229	6	11	0.0000000164383
Setaria italica	scaffold_4	13	CH_sit_121	9	27	0.00000000000454172
Setaria italica	scaffold_5	13	CH_sit_85	8	10	0.0000000000000150991
Setaria italica	scaffold_4	14	CH_sit_62	11	195	0.00000159008
Setaria italica	scaffold_5	14	CH_sit_57	10	117	0.000000202699
Solanum lycopersicum	ch07	13	CH_sly_206	5	5	0.00000000551996
Solanum lycopersicum	ch08	13	CH_sly_773	3	3	0.00075102
Solanum lycopersicum	ch08	13	CH_sly_205	5	5	0.00000000551996
Sorghum bicolor	chr_2	13	CH_sbi_334	4	4	0.00000204455
Sorghum bicolor	chr_3	13	CH_sbi_335	4	4	0.00000204455
Sorghum bicolor	chr_7	13	CH_sbi_684	3	3	0.000747979
Sorghum bicolor	chr_8	13	CH_sbi_120	7	11	0.0000000000127999
Vitis vinifera	chr4	13	CH_vvi_341	4	5	0.00000186607
Vitis vinifera	chr8	13	CH_vvi_690	3	4	0.000793952
Zea mays	2	13	CH_zma_511	3	3	0.000731934
Zea mays	5	13	CH_zma_339	4	7	0.0000659411
Zea mays	9	13	CH_zma_69	8	28	0.000000000229955

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V