PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001220
Description: Legume lectin domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_417	3	3	0.000131812
Arabidopsis thaliana	3	13	CH_ath_275	4	6	0.00000299376
Arabidopsis thaliana	3	13	CH_ath_119	6	12	0.000000000398212
Arabidopsis thaliana	5	13	CH_ath_418	3	3	0.000131812
Arabidopsis thaliana	5	13	CH_ath_152	5	7	0.00000000623688
Arabidopsis thaliana	1	15	CH_ath_8	3	3	0.0000347811
Brachypodium distachyon	Bd1	13	CH_bdi_49	6	6	0.00000000000174001
Brachypodium distachyon	Bd1	13	CH_bdi_6	12	18	1.02394e-24
Brachypodium distachyon	Bd1	14	CH_bdi_5	12	18	1.02394e-24
Carica papaya	supercontig_129	13	CH_cpa_60	4	4	0.00000000374751
Musa acuminata	chr8	13	CH_mac_84	5	12	0.0000000396118
Musa acuminata	chr9	13	CH_mac_1	12	13	3.11217e-31
Musa acuminata	chr9	14	CH_mac_1	12	13	3.11217e-31
Musa acuminata	chr8	15	CH_mac_1	5	12	0.0000000110671
Musa acuminata	chr9	15	CH_mac_6	4	10	0.00000382138
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_653	6	70	0.0000834595
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_747	3	3	0.000206448
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_5	18	27	1.27174e-40
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_210	6	11	0.000000000316948
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_482	5	19	0.00000533925
Oryza sativa ssp. indica	Chr07	14	CH_osaindica_5	18	27	1.27174e-40
Oryza sativa ssp. indica	Chr04	15	CH_osaindica_73	3	5	0.000336456
Oryza sativa ssp. indica	Chr08	15	CH_osaindica_94	3	6	0.00067249
Oryza sativa ssp. japonica	4	13	CH_osa_562	4	8	0.0000403149
Oryza sativa ssp. japonica	7	13	CH_osa_7	20	34	1.65646e-42
Oryza sativa ssp. japonica	7	13	CH_osa_734	3	3	0.000327916
Oryza sativa ssp. japonica	8	13	CH_osa_22	14	27	1.89476e-27
Oryza sativa ssp. japonica	7	14	CH_osa_7	20	34	1.65646e-42
Oryza sativa ssp. japonica	8	14	CH_osa_25	14	27	1.89476e-27
Oryza sativa ssp. japonica	8	15	CH_osa_23	4	6	0.000000749764
Populus trichocarpa	Chr09	13	CH_ptr_86	8	12	2.26194e-16
Setaria italica	scaffold_2	13	CH_sit_61	8	10	6.54954e-17
Setaria italica	scaffold_2	13	CH_sit_295	4	4	0.000000262121
Setaria italica	scaffold_9	13	CH_sit_577	3	3	0.000163136
Solanum lycopersicum	ch10	13	CH_sly_400	4	14	0.00000843453
Sorghum bicolor	chr_1	13	CH_sbi_504	4	12	0.00011422
Sorghum bicolor	chr_1	13	CH_sbi_517	3	3	0.000148439
Sorghum bicolor	chr_10	13	CH_sbi_397	5	24	0.0000148997
Sorghum bicolor	chr_2	13	CH_sbi_155	6	12	0.000000000498061
Vitis vinifera	chr3	13	CH_vvi_431	6	78	0.0000419289
Vitis vinifera	chr8	13	CH_vvi_485	3	3	0.0000775469
Vitis vinifera	chr3	14	CH_vvi_65	10	169	0.00000000117718
Zea mays	1	13	CH_zma_340	3	3	0.0000743619

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V