PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001087
Description: Lipase, GDSL

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_37	9	12	2.67868e-16
Arabidopsis thaliana	1	13	CH_ath_104	7	12	0.0000000000991267
Arabidopsis thaliana	5	13	CH_ath_363	4	6	0.0000586317
Arabidopsis thaliana	5	13	CH_ath_522	6	49	0.000500036
Arabidopsis thaliana	1	14	CH_ath_34	11	126	0.0000000168469
Arabidopsis thaliana	1	15	CH_ath_4	5	11	0.000000602413
Brachypodium distachyon	Bd1	13	CH_bdi_214	7	35	0.00000291887
Brachypodium distachyon	Bd2	13	CH_bdi_197	5	8	0.00000169097
Brachypodium distachyon	Bd2	13	CH_bdi_129	6	10	0.0000000251357
Brachypodium distachyon	Bd1	14	CH_bdi_40	10	221	0.00082379
Carica papaya	supercontig_25	13	CH_cpa_123	4	4	0.00000100837
Carica papaya	supercontig_51	13	CH_cpa_93	5	8	0.000000141655
Carica papaya	supercontig_25	15	CH_cpa_2	4	4	0.000000278029
Musa acuminata	chr4	13	CH_mac_436	5	33	0.000690346
Musa acuminata	chr7	13	CH_mac_429	3	3	0.000546576
Musa acuminata	chr8	13	CH_mac_430	3	3	0.000546576
Musa acuminata	chr8	13	CH_mac_431	3	3	0.000546576
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_432	4	4	0.0000018025
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_977	3	3	0.000763669
Oryza sativa ssp. indica	Chr05	15	CH_osaindica_64	3	3	0.000244594
Oryza sativa ssp. japonica	1	13	CH_osa_53	11	22	1.15224e-19
Oryza sativa ssp. japonica	1	13	CH_osa_166	7	15	0.0000000000651105
Oryza sativa ssp. japonica	10	13	CH_osa_490	4	6	0.0000173098
Oryza sativa ssp. japonica	5	13	CH_osa_387	4	4	0.00000115789
Oryza sativa ssp. japonica	6	13	CH_osa_563	4	7	0.0000403214
Oryza sativa ssp. japonica	1	14	CH_osa_48	11	22	1.15224e-19
Populus trichocarpa	Chr19	13	CH_ptr_505	4	5	0.000032642
Setaria italica	scaffold_2	13	CH_sit_487	4	5	0.0000473288
Setaria italica	scaffold_5	13	CH_sit_54	9	9	8.77171e-18
Setaria italica	scaffold_5	13	CH_sit_240	5	5	0.000000037745
Setaria italica	scaffold_5	14	CH_sit_36	10	14	3.32e-17
Solanum lycopersicum	ch04	13	CH_sly_209	5	5	0.00000000747493
Solanum lycopersicum	ch06	13	CH_sly_244	5	6	0.0000000447421
Solanum lycopersicum	ch10	13	CH_sly_404	5	13	0.00000943743
Sorghum bicolor	chr_1	13	CH_sbi_521	4	7	0.000174012
Sorghum bicolor	chr_10	13	CH_sbi_361	4	4	0.00000501302
Sorghum bicolor	chr_3	13	CH_sbi_336	5	9	0.00000212475
Sorghum bicolor	chr_3	13	CH_sbi_73	9	14	0.00000000000000413562
Sorghum bicolor	chr_9	13	CH_sbi_360	4	4	0.00000501302
Sorghum bicolor	chr_3	14	CH_sbi_42	11	36	0.0000000000000123001
Vitis vinifera	chr1	13	CH_vvi_363	4	4	0.00000442273
Vitis vinifera	chr10	13	CH_vvi_206	5	5	0.0000000154693
Vitis vinifera	chr13	13	CH_vvi_434	5	15	0.0000451154
Vitis vinifera	chr14	13	CH_vvi_364	4	4	0.00000442273
Vitis vinifera	chr18	13	CH_vvi_107	7	7	0.000000000000183208
Vitis vinifera	chr9	13	CH_vvi_82	8	8	6.20205e-16
Vitis vinifera	chr9	14	CH_vvi_84	11	225	0.0000172632
Vitis vinifera	chr13	15	CH_vvi_16	5	15	0.00000386801
Vitis vinifera	chr14	15	CH_vvi_48	3	3	0.000290366
Zea mays	3	13	CH_zma_203	4	4	0.00000228559
Zea mays	5	13	CH_zma_540	3	3	0.000841561
Zea mays	6	13	CH_zma_346	4	7	0.000079474

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V