PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000767
Description: Disease resistance protein

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_164	8	28	0.0000000202606
Arabidopsis thaliana	1	14	CH_ath_48	10	167	0.000264507
Arabidopsis thaliana	1	14	CH_ath_35	10	66	0.0000000238223
Brachypodium distachyon	Bd1	13	CH_bdi_297	6	18	0.0000491684
Brachypodium distachyon	Bd2	13	CH_bdi_165	11	80	0.000000260523
Brachypodium distachyon	Bd2	13	CH_bdi_459	6	27	0.000743886
Brachypodium distachyon	Bd4	13	CH_bdi_18	13	29	9.99008e-17
Brachypodium distachyon	Bd4	14	CH_bdi_13	13	29	9.99008e-17
Carica papaya	supercontig_10	13	CH_cpa_137	5	20	0.00000282278
Carica papaya	supercontig_92	13	CH_cpa_206	3	3	0.0000846033
Musa acuminata	chr1	13	CH_mac_397	3	3	0.000494828
Musa acuminata	chr10	13	CH_mac_396	3	3	0.000494828
Musa acuminata	chr3	13	CH_mac_16	7	8	0.000000000000104046
Musa acuminata	chr7	13	CH_mac_395	3	3	0.000494828
Musa acuminata	chr9	13	CH_mac_334	4	10	0.000236895
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_936	6	21	0.000707703
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_470	10	62	0.00000416897
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_96	10	62	0.00000416897
Oryza sativa ssp. japonica	11	13	CH_osa_152	10	23	0.0000000000180678
Oryza sativa ssp. japonica	12	13	CH_osa_719	6	20	0.000253929
Oryza sativa ssp. japonica	8	13	CH_osa_767	7	37	0.000428976
Physcomitrella patens	scaffold_1	13	CH_ppa_11	5	8	0.0000000305215
Populus trichocarpa	Chr03	13	CH_ptr_217	11	31	0.00000000151604
Populus trichocarpa	Chr04	13	CH_ptr_493	6	10	0.0000212229
Populus trichocarpa	Chr05	13	CH_ptr_715	5	8	0.000489834
Populus trichocarpa	Chr05	13	CH_ptr_749	9	55	0.000649821
Populus trichocarpa	Chr06	13	CH_ptr_563	10	60	0.0000852018
Populus trichocarpa	Chr17	13	CH_ptr_418	6	8	0.00000288724
Populus trichocarpa	scaffold_30	13	CH_ptr_27	24	44	1.69353e-30
Populus trichocarpa	Chr03	14	CH_ptr_89	11	31	0.00000000151604
Populus trichocarpa	Chr05	14	CH_ptr_102	14	127	0.0000154992
Populus trichocarpa	Chr06	14	CH_ptr_105	10	60	0.0000852018
Populus trichocarpa	scaffold_30	14	CH_ptr_28	24	44	1.69353e-30
Populus trichocarpa	scaffold_47	14	CH_ptr_93	10	30	0.0000000466115
Setaria italica	scaffold_6	13	CH_sit_575	4	4	0.000159503
Setaria italica	scaffold_8	13	CH_sit_128	9	14	0.0000000000104929
Setaria italica	scaffold_8	13	CH_sit_73	14	39	0.00000000000000212826
Setaria italica	scaffold_3	14	CH_sit_79	11	128	0.000356845
Solanum lycopersicum	ch04	13	CH_sly_573	4	5	0.000154783
Solanum lycopersicum	ch06	13	CH_sly_567	7	43	0.000130728
Solanum lycopersicum	ch05	14	CH_sly_69	12	207	0.0000700806
Solanum lycopersicum	ch06	15	CH_sly_50	6	43	0.000520446
Sorghum bicolor	chr_8	13	CH_sbi_382	5	7	0.00000895056
Sorghum bicolor	chr_8	14	CH_sbi_67	14	231	0.0000204181
Vitis vinifera	chr13	13	CH_vvi_399	5	6	0.0000125873
Vitis vinifera	chr13_random	13	CH_vvi_697	9	73	0.000928806
Vitis vinifera	chr14	13	CH_vvi_366	8	28	0.00000462302
Vitis vinifera	chr9	13	CH_vvi_432	5	7	0.0000437075

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V