PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	13	CH_bdi_410	3	4	0.000387538
Brachypodium distachyon	Bd2	13	CH_bdi_154	4	4	0.000000141959
Carica papaya	supercontig_136	13	CH_cpa_205	3	3	0.0000846033
Oryza sativa ssp. japonica	6	13	CH_osa_844	3	7	0.000946314
Populus trichocarpa	Chr17	13	CH_ptr_55	12	33	1.92481e-20
Populus trichocarpa	Chr17	14	CH_ptr_54	12	33	1.92481e-20
Setaria italica	scaffold_4	13	CH_sit_740	3	5	0.000587301
Sorghum bicolor	chr_1	13	CH_sbi_689	3	6	0.000853902
Sorghum bicolor	chr_10	13	CH_sbi_437	3	3	0.0000427968
Vitis vinifera	chr13	13	CH_vvi_359	4	5	0.0000033248
Zea mays	6	13	CH_zma_5	14	16	9.75902e-35
Zea mays	6	14	CH_zma_5	14	16	9.75902e-35

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V