PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000620
Description: Drug/metabolite transporter

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	13	CH_ath_97	6	8	0.0000000000562482
Arabidopsis thaliana	4	13	CH_ath_475	3	3	0.00027843
Brachypodium distachyon	Bd2	13	CH_bdi_431	3	3	0.000462499
Brachypodium distachyon	Bd4	13	CH_bdi_432	3	3	0.000462499
Carica papaya	supercontig_36	13	CH_cpa_307	4	12	0.000150266
Carica papaya	supercontig_36	13	CH_cpa_59	5	6	0.00000000339621
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_407	4	5	0.000000806758
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_650	4	12	0.0000792967
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_720	5	41	0.000146978
Oryza sativa ssp. japonica	1	13	CH_osa_649	3	3	0.00013426
Oryza sativa ssp. japonica	1	13	CH_osa_788	3	4	0.000536507
Oryza sativa ssp. japonica	7	13	CH_osa_233	7	39	0.00000000527824
Oryza sativa ssp. japonica	9	13	CH_osa_321	4	4	0.000000174865
Populus trichocarpa	Chr06	13	CH_ptr_642	3	3	0.000231398
Setaria italica	scaffold_2	13	CH_sit_647	3	3	0.000309033
Setaria italica	scaffold_3	13	CH_sit_648	3	3	0.000309033
Setaria italica	scaffold_4	13	CH_sit_754	4	15	0.000829456
Solanum lycopersicum	ch01	13	CH_sly_183	5	5	0.00000000140288
Solanum lycopersicum	ch05	13	CH_sly_182	5	5	0.00000000140288
Solanum lycopersicum	ch08	13	CH_sly_650	3	3	0.000333425
Sorghum bicolor	chr_2	13	CH_sbi_578	3	3	0.000232146
Sorghum bicolor	chr_9	13	CH_sbi_281	4	4	0.000000425286
Vitis vinifera	chr1	13	CH_vvi_201	6	13	0.00000000914684
Vitis vinifera	chr18	13	CH_vvi_592	3	3	0.000406487
Vitis vinifera	chr2	13	CH_vvi_371	4	5	0.00000488245
Vitis vinifera	chr4	13	CH_vvi_26	13	17	2.99177e-27
Vitis vinifera	chr4	14	CH_vvi_27	13	17	2.99177e-27
Zea mays	7	13	CH_zma_539	3	4	0.000829659
Zea mays	9	13	CH_zma_204	5	16	0.00000249837

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V