PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000109
Description: Proton-dependent oligopeptide transporter family

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_232	4	5	0.000000925152
Arabidopsis thaliana	1	13	CH_ath_413	3	3	0.000124489
Arabidopsis thaliana	3	13	CH_ath_50	7	9	0.0000000000000193907
Arabidopsis thaliana	3	15	CH_ath_1	5	9	0.00000000515373
Brachypodium distachyon	Bd1	13	CH_bdi_109	5	5	0.00000000609764
Brachypodium distachyon	Bd2	13	CH_bdi_457	3	3	0.000720869
Brachypodium distachyon	Bd2	13	CH_bdi_60	7	11	0.0000000000159972
Brachypodium distachyon	Bd3	13	CH_bdi_458	3	3	0.000720869
Carica papaya	supercontig_139	13	CH_cpa_22	7	8	0.0000000000000526247
Carica papaya	supercontig_17	13	CH_cpa_316	3	3	0.00027711
Carica papaya	supercontig_5	13	CH_cpa_139	4	5	0.00000315556
Carica papaya	supercontig_99	13	CH_cpa_315	3	3	0.00027711
Carica papaya	supercontig_139	15	CH_cpa_23	3	3	0.00011927
Carica papaya	supercontig_5	15	CH_cpa_32	3	4	0.00047645
Carica papaya	supercontig_99	15	CH_cpa_24	3	3	0.00011927
Musa acuminata	chr11	13	CH_mac_330	3	5	0.000192742
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_40	11	16	3.62561e-22
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_641	4	8	0.0000628668
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_320	5	7	0.0000000371547
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_856	3	3	0.000456031
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_855	3	3	0.000456031
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_444	5	13	0.00000225474
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_152	9	37	0.0000000000028544
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_851	4	12	0.00044174
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_38	11	16	3.62561e-22
Oryza sativa ssp. indica	Chr01	15	CH_osaindica_1	8	16	0.0000000000000112933
Oryza sativa ssp. indica	Chr06	15	CH_osaindica_55	3	3	0.00017249
Oryza sativa ssp. indica	Chr11	15	CH_osaindica_51	4	12	0.000120427
Oryza sativa ssp. japonica	1	13	CH_osa_29	10	10	9.31309e-24
Oryza sativa ssp. japonica	10	13	CH_osa_203	7	25	0.00000000105348
Oryza sativa ssp. japonica	11	13	CH_osa_661	4	11	0.000160933
Oryza sativa ssp. japonica	4	13	CH_osa_725	3	3	0.000290476
Oryza sativa ssp. japonica	5	13	CH_osa_533	4	8	0.0000342768
Oryza sativa ssp. japonica	6	13	CH_osa_199	5	5	0.000000000825721
Oryza sativa ssp. japonica	1	14	CH_osa_31	10	10	9.31309e-24
Oryza sativa ssp. japonica	1	15	CH_osa_13	5	8	0.0000000109341
Oryza sativa ssp. japonica	11	15	CH_osa_54	4	11	0.0000513854
Populus trichocarpa	Chr02	13	CH_ptr_694	3	3	0.000341839
Populus trichocarpa	Chr18	13	CH_ptr_41	12	16	1.91697e-25
Populus trichocarpa	Chr18	14	CH_ptr_42	12	16	1.91697e-25
Setaria italica	scaffold_1	13	CH_sit_743	3	3	0.000659862
Setaria italica	scaffold_3	13	CH_sit_92	7	7	0.0000000000000279446
Setaria italica	scaffold_3	13	CH_sit_220	6	12	0.0000000101574
Setaria italica	scaffold_5	13	CH_sit_62	8	8	6.93278e-17
Setaria italica	scaffold_9	13	CH_sit_126	7	11	0.00000000000914088
Setaria italica	scaffold_9	13	CH_sit_172	6	9	0.000000000929462
Setaria italica	scaffold_5	14	CH_sit_77	10	292	0.000234835
Setaria italica	scaffold_9	14	CH_sit_61	12	300	0.00000110418
Setaria italica	scaffold_3	15	CH_sit_10	4	6	0.00000510892
Solanum lycopersicum	ch03	13	CH_sly_396	4	5	0.00000690387
Solanum lycopersicum	ch04	13	CH_sly_721	3	3	0.000560757
Solanum lycopersicum	ch05	13	CH_sly_37	10	11	2.6678e-21
Solanum lycopersicum	ch06	13	CH_sly_148	6	7	0.0000000000567985
Solanum lycopersicum	ch11	13	CH_sly_722	3	3	0.000560757
Solanum lycopersicum	ch12	13	CH_sly_91	7	7	0.0000000000000193626
Solanum lycopersicum	ch05	14	CH_sly_28	10	11	2.6678e-21
Solanum lycopersicum	ch03	15	CH_sly_16	4	5	0.00000362879
Solanum lycopersicum	ch05	15	CH_sly_10	5	9	0.000000187908
Solanum lycopersicum	ch06	15	CH_sly_5	6	7	0.0000000000213751
Solanum lycopersicum	ch11	15	CH_sly_45	3	3	0.000347128
Solanum lycopersicum	ch12	15	CH_sly_3	6	6	0.00000000000305894
Sorghum bicolor	chr_1	13	CH_sbi_26	12	19	1.42787e-22
Sorghum bicolor	chr_3	13	CH_sbi_71	8	10	0.00000000000000353574
Sorghum bicolor	chr_6	13	CH_sbi_324	4	4	0.00000179947
Sorghum bicolor	chr_9	13	CH_sbi_680	3	3	0.00068002
Sorghum bicolor	chr_9	13	CH_sbi_238	5	7	0.0000000984686
Sorghum bicolor	chr_1	14	CH_sbi_27	12	19	1.42787e-22
Sorghum bicolor	chr_1	15	CH_sbi_5	5	9	0.000000130003
Sorghum bicolor	chr_3	15	CH_sbi_2	6	10	0.00000000040953
Vitis vinifera	chr17	13	CH_vvi_491	4	10	0.0000839919
Vitis vinifera	chr18	13	CH_vvi_24	12	13	4.54538e-28
Vitis vinifera	chr18	14	CH_vvi_25	12	13	4.54538e-28
Vitis vinifera	chr17	15	CH_vvi_36	3	3	0.0000838345
Zea mays	1	13	CH_zma_80	5	5	0.00000000122947
Zea mays	3	13	CH_zma_463	3	3	0.000323702
Zea mays	6	13	CH_zma_81	5	5	0.00000000122947
Zea mays	1	15	CH_zma_10	3	3	0.000190139
Zea mays	6	15	CH_zma_11	3	3	0.000190139

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V