Functional Clusters Overview
Overview
This tool displays detected clusters of functionally related genes on a per chromosome basis.
Detection of these clusters is done using the CHunter tool, and can be based upon multiple types of functional annotation: GO, InterPro, MapMan, ...
Detection of these clusters is done using the CHunter tool, and can be based upon multiple types of functional annotation: GO, InterPro, MapMan, ...
Available Data
Organism | GO Experiments | InterPro Experiments | MapMan Experiments |
---|---|---|---|
Arabidopsis thaliana | Unavailable | 13 , 14 , 15 | 17 , 18 , 19 , 20 |
Brachypodium distachyon | Unavailable | 13 , 14 , 15 , 16 | 17 , 18 , 19 , 20 |
Carica papaya | Unavailable | 13 , 14 , 15 | Unavailable |
Chlamydomonas reinhardtii | Unavailable | 13 , 14 , 15 , 16 | 17 , 18 , 19 , 20 |
Hordeum vulgare | Unavailable | Unavailable | Unavailable |
Musa acuminata | Unavailable | 13 , 14 , 15 | Unavailable |
Oryza sativa ssp. indica | Unavailable | 13 , 14 , 15 , 16 | Unavailable |
Oryza sativa ssp. japonica | Unavailable | 13 , 14 , 15 , 16 | 17 , 18 , 19 , 20 |
Ostreococcus lucimarinus | Unavailable | 13 , 14 , 15 | Unavailable |
Physcomitrella patens | Unavailable | 13 , 14 , 15 | 17 , 18 , 19 |
Populus trichocarpa | Unavailable | 13 , 14 , 15 | 17 , 18 , 19 , 20 |
Setaria italica | Unavailable | 13 , 14 , 15 , 16 | 17 , 18 , 19 , 20 |
Solanum lycopersicum | Unavailable | 13 , 14 , 15 , 16 | 17 , 18 , 19 , 20 |
Sorghum bicolor | Unavailable | 13 , 14 , 15 , 16 | Unavailable |
Vitis vinifera | Unavailable | 13 , 14 , 15 , 16 | 17 , 18 , 19 , 20 |
Zea mays | Unavailable | 13 , 14 , 15 | 17 , 18 , 19 , 20 |
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | Min e-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |