Functional Clusters Overview

Overview

This tool displays detected clusters of functionally related genes on a per chromosome basis.
Detection of these clusters is done using the CHunter tool, and can be based upon multiple types of functional annotation: GO, InterPro, MapMan, ...

Available Data

OrganismGO ExperimentsInterPro ExperimentsMapMan Experiments
Arabidopsis thalianaUnavailable13 , 14 , 1517 , 18 , 19 , 20
Brachypodium distachyonUnavailable13 , 14 , 15 , 1617 , 18 , 19 , 20
Carica papayaUnavailable13 , 14 , 15Unavailable
Chlamydomonas reinhardtiiUnavailable13 , 14 , 15 , 1617 , 18 , 19 , 20
Hordeum vulgareUnavailableUnavailableUnavailable
Musa acuminataUnavailable13 , 14 , 15Unavailable
Oryza sativa ssp. indicaUnavailable13 , 14 , 15 , 16Unavailable
Oryza sativa ssp. japonicaUnavailable13 , 14 , 15 , 1617 , 18 , 19 , 20
Ostreococcus lucimarinusUnavailable13 , 14 , 15Unavailable
Physcomitrella patensUnavailable13 , 14 , 1517 , 18 , 19
Populus trichocarpaUnavailable13 , 14 , 1517 , 18 , 19 , 20
Setaria italicaUnavailable13 , 14 , 15 , 1617 , 18 , 19 , 20
Solanum lycopersicumUnavailable13 , 14 , 15 , 1617 , 18 , 19 , 20
Sorghum bicolorUnavailable13 , 14 , 15 , 16Unavailable
Vitis viniferaUnavailable13 , 14 , 15 , 1617 , 18 , 19 , 20
Zea maysUnavailable13 , 14 , 1517 , 18 , 19 , 20
Exp idData typeData filterMin genes clusterMax genes clusterMax cluster sizeMin e-valueTandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V