Child GO terms
- Original GO term
- GO:0003677
- Description
- DNA binding
- Type
- MF
GO | description | genes | species | aly | ath | atr | bra | bvu | cla | cme | cpa | cre | cru | csi | egr | fve | gma | gra | lja | mdo | mes | mtr | olu | osa | ppa | ppe | ptr | rco | sly | stu | tca | tpa | vvi | zma |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0043565 | sequence-specific DNA binding | 14943 | 31 | 569 | 469 | 248 | 787 | 327 | 359 | 366 | 638 | 82 | 576 | 402 | 416 | 358 | 1133 | 807 | 231 | 832 | 533 | 571 | 50 | 474 | 323 | 432 | 691 | 452 | 543 | 525 | 351 | 432 | 348 | 618 |
GO:0043566 | structure-specific DNA binding | 2191 | 31 | 73 | 87 | 66 | 89 | 65 | 61 | 62 | 66 | 31 | 74 | 61 | 59 | 69 | 128 | 86 | 38 | 106 | 71 | 76 | 30 | 58 | 64 | 61 | 92 | 64 | 112 | 77 | 63 | 70 | 65 | 67 |
GO:0000975 | regulatory region DNA binding | 1699 | 31 | 66 | 66 | 33 | 89 | 38 | 44 | 44 | 41 | 7 | 63 | 47 | 51 | 44 | 114 | 95 | 29 | 93 | 69 | 64 | 5 | 55 | 47 | 42 | 70 | 44 | 63 | 65 | 45 | 57 | 39 | 70 |
GO:0044212 | transcription regulatory region DNA binding | 1697 | 31 | 66 | 65 | 33 | 89 | 37 | 44 | 44 | 41 | 7 | 63 | 47 | 51 | 44 | 114 | 95 | 29 | 93 | 69 | 64 | 5 | 55 | 47 | 42 | 70 | 44 | 63 | 65 | 45 | 57 | 39 | 70 |
GO:0003690 | double-stranded DNA binding | 1396 | 31 | 48 | 52 | 45 | 60 | 42 | 41 | 42 | 47 | 21 | 44 | 36 | 35 | 43 | 73 | 51 | 25 | 71 | 46 | 41 | 22 | 35 | 40 | 39 | 57 | 41 | 75 | 53 | 38 | 47 | 43 | 43 |
GO:0000976 | transcription regulatory region sequence-specific DNA binding | 1132 | 31 | 41 | 38 | 22 | 65 | 23 | 31 | 33 | 27 | 3 | 38 | 30 | 34 | 27 | 79 | 69 | 17 | 68 | 45 | 42 | 2 | 38 | 30 | 27 | 47 | 29 | 43 | 46 | 26 | 38 | 26 | 48 |
GO:0003684 | damaged DNA binding | 886 | 31 | 25 | 33 | 19 | 29 | 34 | 26 | 25 | 33 | 22 | 24 | 25 | 33 | 21 | 47 | 31 | 17 | 28 | 26 | 26 | 32 | 27 | 33 | 25 | 33 | 40 | 46 | 25 | 23 | 22 | 24 | 32 |
GO:0003697 | single-stranded DNA binding | 808 | 31 | 24 | 38 | 19 | 37 | 23 | 23 | 22 | 24 | 10 | 30 | 25 | 24 | 23 | 51 | 37 | 13 | 36 | 26 | 28 | 10 | 21 | 21 | 24 | 38 | 25 | 36 | 22 | 25 | 26 | 23 | 24 |
GO:0030983 | mismatched DNA binding | 537 | 31 | 16 | 13 | 21 | 16 | 17 | 15 | 17 | 21 | 11 | 12 | 12 | 13 | 13 | 27 | 18 | 7 | 40 | 17 | 12 | 11 | 13 | 17 | 13 | 22 | 16 | 40 | 27 | 12 | 12 | 17 | 19 |
GO:0042162 | telomeric DNA binding | 332 | 31 | 15 | 14 | 7 | 19 | 8 | 10 | 10 | 6 | 3 | 14 | 8 | 12 | 9 | 24 | 14 | 4 | 12 | 11 | 12 | 5 | 8 | 7 | 9 | 17 | 7 | 17 | 10 | 9 | 15 | 9 | 7 |
GO:0008327 | methyl-CpG binding | 233 | 30 | 10 | 20 | 5 | 12 | 9 | 5 | 5 | 5 | 2 | 10 | 8 | 4 | 8 | 9 | 9 | 5 | 7 | 8 | 12 | 0 | 4 | 4 | 7 | 8 | 6 | 9 | 12 | 8 | 11 | 6 | 5 |
GO:0031490 | chromatin DNA binding | 204 | 31 | 6 | 7 | 7 | 6 | 7 | 4 | 4 | 4 | 2 | 5 | 6 | 6 | 10 | 17 | 8 | 6 | 9 | 7 | 11 | 1 | 7 | 9 | 4 | 7 | 4 | 10 | 9 | 6 | 4 | 4 | 7 |
GO:0010385 | double-stranded methylated DNA binding | 197 | 31 | 10 | 11 | 6 | 6 | 5 | 7 | 6 | 5 | 2 | 9 | 6 | 5 | 7 | 9 | 8 | 4 | 5 | 6 | 9 | 1 | 5 | 6 | 6 | 7 | 6 | 5 | 5 | 7 | 9 | 6 | 8 |
GO:0001047 | core promoter binding | 177 | 30 | 11 | 10 | 2 | 7 | 6 | 4 | 4 | 5 | 0 | 9 | 5 | 6 | 4 | 12 | 8 | 3 | 7 | 6 | 8 | 1 | 4 | 6 | 4 | 6 | 5 | 6 | 6 | 5 | 7 | 4 | 6 |
GO:0003691 | double-stranded telomeric DNA binding | 175 | 30 | 9 | 8 | 3 | 12 | 4 | 5 | 5 | 3 | 0 | 8 | 4 | 4 | 5 | 12 | 9 | 1 | 8 | 7 | 7 | 1 | 4 | 3 | 5 | 9 | 3 | 10 | 6 | 5 | 9 | 4 | 2 |
GO:0000987 | core promoter proximal region sequence-specific DNA binding | 120 | 31 | 4 | 4 | 4 | 4 | 3 | 3 | 4 | 3 | 3 | 3 | 5 | 2 | 4 | 7 | 6 | 4 | 5 | 2 | 4 | 1 | 4 | 2 | 4 | 4 | 4 | 5 | 6 | 3 | 4 | 4 | 5 |
GO:0001159 | core promoter proximal region DNA binding | 120 | 31 | 4 | 4 | 4 | 4 | 3 | 3 | 4 | 3 | 3 | 3 | 5 | 2 | 4 | 7 | 6 | 4 | 5 | 2 | 4 | 1 | 4 | 2 | 4 | 4 | 4 | 5 | 6 | 3 | 4 | 4 | 5 |
GO:0008301 | DNA binding, bending | 102 | 27 | 6 | 5 | 2 | 8 | 2 | 3 | 3 | 2 | 0 | 5 | 2 | 2 | 3 | 8 | 6 | 0 | 6 | 4 | 4 | 0 | 1 | 0 | 3 | 5 | 1 | 4 | 4 | 3 | 6 | 3 | 1 |
GO:0003680 | AT DNA binding | 94 | 28 | 5 | 6 | 2 | 5 | 2 | 2 | 2 | 3 | 0 | 5 | 2 | 1 | 2 | 6 | 6 | 1 | 4 | 4 | 2 | 0 | 0 | 1 | 2 | 4 | 3 | 9 | 5 | 2 | 5 | 2 | 1 |
GO:0001046 | core promoter sequence-specific DNA binding | 87 | 30 | 7 | 6 | 1 | 5 | 3 | 2 | 2 | 3 | 0 | 5 | 2 | 3 | 2 | 5 | 3 | 1 | 4 | 2 | 5 | 1 | 1 | 2 | 2 | 2 | 2 | 3 | 3 | 2 | 5 | 2 | 1 |
GO:0003689 | DNA clamp loader activity | 80 | 30 | 4 | 1 | 2 | 1 | 3 | 1 | 2 | 4 | 1 | 4 | 3 | 1 | 2 | 9 | 4 | 0 | 9 | 1 | 1 | 2 | 1 | 4 | 2 | 8 | 1 | 3 | 2 | 1 | 1 | 1 | 1 |
GO:0000182 | rDNA binding | 77 | 29 | 2 | 2 | 3 | 3 | 2 | 3 | 2 | 2 | 0 | 2 | 2 | 8 | 3 | 4 | 3 | 1 | 4 | 3 | 2 | 0 | 3 | 1 | 3 | 4 | 2 | 2 | 2 | 2 | 3 | 2 | 2 |
GO:0043047 | single-stranded telomeric DNA binding | 75 | 30 | 4 | 4 | 1 | 5 | 2 | 2 | 2 | 1 | 0 | 4 | 2 | 2 | 2 | 4 | 4 | 2 | 5 | 2 | 2 | 1 | 1 | 2 | 2 | 3 | 2 | 5 | 1 | 2 | 4 | 1 | 1 |
GO:0001164 | RNA polymerase I CORE element sequence-specific DNA binding | 47 | 29 | 4 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 0 | 2 | 1 | 2 | 1 | 2 | 1 | 0 | 3 | 1 | 4 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 1 | 2 | 1 | 1 |
GO:0001163 | RNA polymerase I regulatory region sequence-specific DNA binding | 47 | 29 | 4 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 0 | 2 | 1 | 2 | 1 | 2 | 1 | 0 | 3 | 1 | 4 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 1 | 2 | 1 | 1 |
GO:0001013 | RNA polymerase I regulatory region DNA binding | 47 | 29 | 4 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 0 | 2 | 1 | 2 | 1 | 2 | 1 | 0 | 3 | 1 | 4 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 1 | 2 | 1 | 1 |
GO:0080084 | 5S rDNA binding | 47 | 28 | 1 | 1 | 2 | 2 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 7 | 2 | 2 | 2 | 0 | 3 | 2 | 1 | 0 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 1 |
GO:0097100 | supercoiled DNA binding | 41 | 28 | 3 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | 0 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 3 | 1 | 3 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 |
GO:0001158 | enhancer sequence-specific DNA binding | 31 | 25 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 0 |
GO:0001012 | RNA polymerase II regulatory region DNA binding | 31 | 25 | 2 | 2 | 0 | 3 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 |
GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding | 31 | 25 | 2 | 2 | 0 | 3 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 |
GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | 31 | 25 | 2 | 2 | 0 | 3 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 |
GO:0035326 | enhancer binding | 31 | 25 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 0 |
GO:0032137 | guanine/thymine mispair binding | 9 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
GO:0000217 | DNA secondary structure binding | 6 | 2 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0032135 | DNA insertion or deletion binding | 5 | 1 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0032138 | single base insertion or deletion binding | 4 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0070361 | mitochondrial light strand promoter anti-sense binding | 4 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000400 | four-way junction DNA binding | 4 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0003688 | DNA replication origin binding | 4 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
GO:0000404 | loop DNA binding | 2 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0032356 | oxidized DNA binding | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0032357 | oxidized purine DNA binding | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0031492 | nucleosomal DNA binding | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000406 | double-strand/single-strand DNA junction binding | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000405 | bubble DNA binding | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0000403 | Y-form DNA binding | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |