Anchorpoints

Gene id
TP7G00580
Organism
Thellungiella parvula

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G36330No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G41360Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. homolog of Xeroderma pigmentosum complementation group B 2 (XPB2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). homolog of Xeroderma pigmentosum complementation group B 25+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G10550No description available.A04+View
BR02G01110No description available.A02+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G02330No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G06680No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00180G00120No description available.supercontig_180+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G32770No description available.scaffold_7-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01210No description available.scaffold00009+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G05560No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G03230DNA repair helicase XPB1 (AtXPB1) (putative)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G37610No description available.Gm05-View
GM08G01970No description available.Gm08+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G15690No description available.Chr03-View
GR07G02380No description available.Chr07+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05280G00300No description available.scaffold05280-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G098675DNA repair helicase XPB1chr8+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G11260No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G10130No description available.Chr01-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30190G04170No description available.30190+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G029080DNA repair helicase (AHRD V1 **** Q98SB9_GUITH); contains Interpro domain(s) IPR001161 Xeroderma pigmentosum group B protein (XP-B)chr08-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G27860No description available.scaffold_3+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G03440name=GSVIVG01019392001;chr2+View


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Gene id
Species
Description
Chromosome
Strand