Anchorpoints

Gene id
TP3G11340
Organism
Thellungiella parvula

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G13630No description available.scaffold_3-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G13170ATSPO11-1; CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), Meiotic recombination, Spo11 (InterPro:IPR013048), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT5G02820.1); Has 908 Blast hits to 908 proteins in 313 species: Archae - 216; Bacteria - 16; Metazoa - 170; Fungi - 122; Plants - 151; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink). Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase. Spo11/DNA topoisomerase VI, subunit A protein3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR00G00360No description available.Scaffold000164-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV4G02390No description available.Bvchr4.sca016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00012G01620No description available.supercontig_12+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G11990No description available.scaffold_3-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G09910No description available.Chr02-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G36670No description available.Chr01-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL07G065430DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI)%3B contains Interpro domain(s) IPR013048 Meiotic recombination Spo11ch07-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST07G028440DNA topoisomerase (ATP-hydrolyzing) (AHRD V1 **** A7HE24_ANADF); contains Interpro domain(s) IPR002815 Spo11/DNA topoisomerase VI, subunit Achr07+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G05430name=GSVIVG01014659001;chr19-View


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Gene id
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Description
Chromosome
Strand