Anchorpoints
- Gene id
- TP1G19980
- Organism
- Thellungiella parvula
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G30080 | similar to AT1G35330|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP6G08420 | similar to AT4G09130|zinc finger (C3HC4-type RING finger) family protein | ch6-3 | - | View |
TP5G27290 | similar to AT1G72200|zinc finger (C3HC4-type RING finger) family protein | ch5-6 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G07630 | No description available. | scaffold_7 | - | View |
AL2G20980 | No description available. | scaffold_2 | - | View |
AL1G37010 | No description available. | scaffold_1 | + | View |
AL1G24100 | No description available. | scaffold_1 | + | View |
AL6G31270 | No description available. | scaffold_6 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G22500 | RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink). | 1 | + | View |
AT4G40070 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink). | 4 | + | View |
AT1G72200 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink). | 1 | - | View |
AT4G09100 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G25210 | No description available. | A03 | + | View |
BR07G09410 | No description available. | A07 | - | View |
BR07G21280 | No description available. | A07 | + | View |
BR02G21370 | No description available. | A02 | - | View |
BR07G28390 | No description available. | A07 | - | View |
BR09G25090 | No description available. | A09 | - | View |
BR09G17020 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G10150 | No description available. | Bvchr1.sca002 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL01G18810 | No description available. | Chr1 | - | View |
CL08G11060 | No description available. | Chr8 | + | View |
CL11G08550 | No description available. | Chr11 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G04150 | No description available. | CM3.5_scaffold00014 | + | View |
CM00007G07610 | No description available. | CM3.5_scaffold00007 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00055G00570 | No description available. | supercontig_55 | - | View |
CP00036G01860 | No description available. | supercontig_36 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G21100 | No description available. | scaffold_1 | + | View |
CRU_002G17930 | No description available. | scaffold_2 | - | View |
CRU_006G26720 | No description available. | scaffold_6 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00004G02510 | No description available. | scaffold00004 | + | View |
CS00059G00540 | No description available. | scaffold00059 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G04350 | No description available. | scaffold_9 | + | View |
EG0006G03310 | No description available. | scaffold_6 | + | View |
EG0002G00370 | No description available. | scaffold_2 | + | View |
EG0007G06460 | No description available. | scaffold_7 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G21960 | Probable RING-H2 finger protein ATL5G | scf0513168 | - | View |
FV5G20140 | RING-H2 finger protein ATL1O (similar to) | LG5 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM02G37296 | No description available. | Gm02 | + | View |
GM14G35550 | No description available. | Gm14 | + | View |
GM08G18870 | No description available. | Gm08 | - | View |
GM13G01461 | No description available. | Gm13 | - | View |
GM04G10610 | No description available. | Gm04 | - | View |
GM18G01791 | No description available. | Gm18 | - | View |
GM06G10460 | No description available. | Gm06 | - | View |
GM08G07470 | No description available. | Gm08 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR08G01660 | No description available. | Chr08 | + | View |
GR12G14310 | No description available. | Chr12 | + | View |
GR09G23310 | No description available. | Chr09 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ6G028400 | No description available. | chr6 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME08265G01330 | No description available. | scaffold08265 | + | View |
ME06916G02150 | No description available. | scaffold06916 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G099650 | RING-H2 zinc finger protein C putative | chr3 | + | View |
MT2G009310 | RING-H2 zinc finger protein | chr2 | + | View |
MT4G093830 | RING-H2 zinc finger protein | chr4 | - | View |
MT5G064890 | RING-H2 zinc finger protein | chr5 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G08920 | Zinc finger, C3HC4 type domain containing protein, expressed E3 ubiquitin-protein ligase Os03g0188200 | 3 | - | View |
OS08G37760 | zinc finger, C3HC4 type domain containing protein, expressed | 8 | + | View |
OS06G11450 | zinc finger, C3HC4 type domain containing protein, expressed | 6 | - | View |
OS02G52210 | zinc finger, C3HC4 type domain containing protein, expressed | 2 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G07130 | No description available. | Chr05 | - | View |
PT05G16090 | No description available. | Chr05 | - | View |
PT17G04930 | No description available. | Chr17 | - | View |
PT07G09750 | No description available. | Chr07 | + | View |
PT02G10180 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29908G02440 | No description available. | 29908 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G074790 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
SL11G010330 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch11 | + | View |
SL01G105610 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch01 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST11G009370 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr11 | - | View |
ST01G042760 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr01 | + | View |
ST12G025880 | Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr12 | + | View |
ST04G028570 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G09010 | No description available. | scaffold_1 | - | View |
TC0008G09720 | No description available. | scaffold_8 | - | View |
TC0002G12760 | No description available. | scaffold_2 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G04050 | name=GSVIVG01009096001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G06160 | No description available. | 1 | - | View |
ZM09G27130 | No description available. | 9 | + | View |
ZM05G41030 | No description available. | 5 | + | View |
ZM07G16760 | No description available. | 7 | - | View |
ZM02G32050 | No description available. | 2 | - | View |