Anchorpoints

Gene id
TC0009G08650
Organism
Theobroma cacao

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G36620No description available.scaffold_3+View
AL7G12070No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G29570Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29580.2); Has 1057 Blast hits to 1055 proteins in 440 species: Archae - 0; Bacteria - 888; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). Cytidine/deoxycytidylate deaminase family protein4+View
AT2G19570cytidine deaminase 1 (CDA1); CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 2638 Blast hits to 2526 proteins in 1057 species: Archae - 42; Bacteria - 2022; Metazoa - 110; Fungi - 58; Plants - 130; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink). Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds. cytidine deaminase 12-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G01250No description available.A07+View
BR03G50950No description available.A03+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G15320No description available.Chr3-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00025G02530No description available.CM3.5_scaffold00025+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G32540No description available.scaffold_3-View
CRU_007G10330No description available.scaffold_7-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00086G00070No description available.scaffold00086+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0003G07430No description available.scaffold_3-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G36910Cytidine deaminase (CDA) (probable)scf0513146+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM07G15510No description available.Gm07+View
GM05G36320No description available.Gm05+View
GM08G03280No description available.Gm08-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G03110No description available.Chr09+View
GR04G28400No description available.Chr04+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G047540No description available.chr4-View
LJ2G013600No description available.chr2+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD15G014650No description available.15+View
MD02G006410No description available.2+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT6G092660homotetrameric cytidine deaminasechr6+View
MT8G101570homotetrameric cytidine deaminasechr8-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G23150No description available.scaffold_7-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G15060No description available.Chr06+View
PT18G06640No description available.Chr18+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29912G00810No description available.29912-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST07G014020Cytidine deaminase (AHRD V1 ***- Q9XEX5_ARATH); contains Interpro domain(s) IPR006263 Cytidine deaminase, homodimericchr07+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G27420similar to AT4G29600|cytidine deaminase, putative / cytidine aminohydrolase, putativech7-5+View
TP3G32950similar to AT2G19570|CDA1 (CYTIDINE DEAMINASE 1)ch3-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV11G03710name=GSVIVG01015216001;chr11-View


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Gene id
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Description
Chromosome
Strand