Anchorpoints
- Gene id
- TC0008G09720
- Organism
- Theobroma cacao
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G09010 | No description available. | scaffold_1 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G02360 | No description available. | scaffold_7 | + | View |
AL1G22020 | No description available. | scaffold_1 | + | View |
AL2G25320 | No description available. | scaffold_2 | + | View |
AL1G37010 | No description available. | scaffold_1 | + | View |
AL1G24100 | No description available. | scaffold_1 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G22500 | RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink). | 1 | + | View |
AT1G20823 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink). RING/U-box superfamily protein | 1 | + | View |
AT1G76410 | ATL8; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1); Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2299; Fungi - 634; Plants - 4930; Viruses - 29; Other Eukaryotes - 1109 (source: NCBI BLink). RING/U-box superfamily protein | 1 | + | View |
AT4G09100 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G31660 | No description available. | A07 | + | View |
BR03G25210 | No description available. | A03 | + | View |
BR08G24970 | No description available. | A08 | - | View |
BR07G19610 | No description available. | A07 | - | View |
BR07G10200 | No description available. | A07 | - | View |
BR02G23760 | No description available. | A02 | + | View |
BR09G25090 | No description available. | A09 | - | View |
BR06G15020 | No description available. | A06 | + | View |
BR09G17020 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G10150 | No description available. | Bvchr1.sca002 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL01G18810 | No description available. | Chr1 | - | View |
CL08G11060 | No description available. | Chr8 | + | View |
CL11G08550 | No description available. | Chr11 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM01596G02590 | No description available. | CM3.5_scaffold01596 | - | View |
CM00014G04150 | No description available. | CM3.5_scaffold00014 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00055G00570 | No description available. | supercontig_55 | - | View |
CP00036G01860 | No description available. | supercontig_36 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G21100 | No description available. | scaffold_1 | + | View |
CRU_001G19450 | No description available. | scaffold_1 | + | View |
CRU_006G26720 | No description available. | scaffold_6 | + | View |
CRU_002G22010 | No description available. | scaffold_2 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G07000 | No description available. | scaffold00002 | + | View |
CS00004G02510 | No description available. | scaffold00004 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G03310 | No description available. | scaffold_6 | + | View |
EG0002G00370 | No description available. | scaffold_2 | + | View |
EG0006G14750 | No description available. | scaffold_6 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G21960 | Probable RING-H2 finger protein ATL5G | scf0513168 | - | View |
FV5G20140 | RING-H2 finger protein ATL1O (similar to) | LG5 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM04G01680 | No description available. | Gm04 | - | View |
GM02G37296 | No description available. | Gm02 | + | View |
GM14G35550 | No description available. | Gm14 | + | View |
GM06G01770 | No description available. | Gm06 | - | View |
GM06G10460 | No description available. | Gm06 | - | View |
GM05G30920 | No description available. | Gm05 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR02G11350 | No description available. | Chr02 | - | View |
GR05G09510 | No description available. | Chr05 | + | View |
GR09G23310 | No description available. | Chr09 | - | View |
GR07G23570 | No description available. | Chr07 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME02943G01210 | No description available. | scaffold02943 | + | View |
ME06916G02150 | No description available. | scaffold06916 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G086680 | RING finger protein | chr3 | - | View |
MT3G099650 | RING-H2 zinc finger protein C putative | chr3 | + | View |
MT8G089880 | zinc finger C C3HC4 type (RING finger) protein | chr8 | - | View |
MT5G064890 | RING-H2 zinc finger protein | chr5 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS08G37760 | zinc finger, C3HC4 type domain containing protein, expressed | 8 | + | View |
OS06G11450 | zinc finger, C3HC4 type domain containing protein, expressed | 6 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G19740 | No description available. | scaffold_8 | + | View |
PPE_005G00730 | No description available. | scaffold_5 | - | View |
PPE_006G20110 | No description available. | scaffold_6 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G07130 | No description available. | Chr05 | - | View |
PT02G00640 | No description available. | Chr02 | - | View |
PT05G16090 | No description available. | Chr05 | - | View |
PT07G09750 | No description available. | Chr07 | + | View |
PT02G10180 | No description available. | Chr02 | + | View |
PT05G25520 | No description available. | Chr05 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G07220 | No description available. | 30170 | + | View |
RC29908G02440 | No description available. | 29908 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G074790 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
SL12G094690 | Ring finger protein (AHRD V1 ***- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch12 | + | View |
SL04G082690 | Ring finger protein (AHRD V1 *-*- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST11G009370 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr11 | - | View |
ST04G028570 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
ST12G028020 | Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr12 | + | View |
ST04G036170 | Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G31570 | similar to AT1G76410|ATL8 | ch5-7 | + | View |
TP1G18520 | similar to AT1G20823|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP6G08420 | similar to AT4G09130|zinc finger (C3HC4-type RING finger) family protein | ch6-3 | - | View |
TP1G19980 | similar to AT1G22500|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G04050 | name=GSVIVG01009096001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM02G32050 | No description available. | 2 | - | View |