Anchorpoints

Gene id
TC0008G09720
Organism
Theobroma cacao

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
TC0001G09010No description available.scaffold_1-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G02360No description available.scaffold_7+View
AL1G22020No description available.scaffold_1+View
AL2G25320No description available.scaffold_2+View
AL1G37010No description available.scaffold_1+View
AL1G24100No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G22500RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).1+View
AT1G20823RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink). RING/U-box superfamily protein1+View
AT1G76410ATL8; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1); Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2299; Fungi - 634; Plants - 4930; Viruses - 29; Other Eukaryotes - 1109 (source: NCBI BLink). RING/U-box superfamily protein1+View
AT4G09100RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G31660No description available.A07+View
BR03G25210No description available.A03+View
BR08G24970No description available.A08-View
BR07G19610No description available.A07-View
BR07G10200No description available.A07-View
BR02G23760No description available.A02+View
BR09G25090No description available.A09-View
BR06G15020No description available.A06+View
BR09G17020No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G10150No description available.Bvchr1.sca002+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G18810No description available.Chr1-View
CL08G11060No description available.Chr8+View
CL11G08550No description available.Chr11+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM01596G02590No description available.CM3.5_scaffold01596-View
CM00014G04150No description available.CM3.5_scaffold00014+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00055G00570No description available.supercontig_55-View
CP00036G01860No description available.supercontig_36+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G21100No description available.scaffold_1+View
CRU_001G19450No description available.scaffold_1+View
CRU_006G26720No description available.scaffold_6+View
CRU_002G22010No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G07000No description available.scaffold00002+View
CS00004G02510No description available.scaffold00004+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G03310No description available.scaffold_6+View
EG0002G00370No description available.scaffold_2+View
EG0006G14750No description available.scaffold_6+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G21960Probable RING-H2 finger protein ATL5Gscf0513168-View
FV5G20140RING-H2 finger protein ATL1O (similar to)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G01680No description available.Gm04-View
GM02G37296No description available.Gm02+View
GM14G35550No description available.Gm14+View
GM06G01770No description available.Gm06-View
GM06G10460No description available.Gm06-View
GM05G30920No description available.Gm05-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G11350No description available.Chr02-View
GR05G09510No description available.Chr05+View
GR09G23310No description available.Chr09-View
GR07G23570No description available.Chr07+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME02943G01210No description available.scaffold02943+View
ME06916G02150No description available.scaffold06916-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G086680RING finger proteinchr3-View
MT3G099650RING-H2 zinc finger protein C putativechr3+View
MT8G089880zinc finger C C3HC4 type (RING finger) proteinchr8-View
MT5G064890RING-H2 zinc finger proteinchr5+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS08G37760zinc finger, C3HC4 type domain containing protein, expressed8+View
OS06G11450zinc finger, C3HC4 type domain containing protein, expressed6-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G19740No description available.scaffold_8+View
PPE_005G00730No description available.scaffold_5-View
PPE_006G20110No description available.scaffold_6+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G07130No description available.Chr05-View
PT02G00640No description available.Chr02-View
PT05G16090No description available.Chr05-View
PT07G09750No description available.Chr07+View
PT02G10180No description available.Chr02+View
PT05G25520No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G07220No description available.30170+View
RC29908G02440No description available.29908+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G074790RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View
SL12G094690Ring finger protein (AHRD V1 ***- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech12+View
SL04G082690Ring finger protein (AHRD V1 *-*- O49869_HORVU)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G009370RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr11-View
ST04G028570RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View
ST12G028020Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr12+View
ST04G036170Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G31570similar to AT1G76410|ATL8ch5-7+View
TP1G18520similar to AT1G20823|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP6G08420similar to AT4G09130|zinc finger (C3HC4-type RING finger) family proteinch6-3-View
TP1G19980similar to AT1G22500|zinc finger (C3HC4-type RING finger) family proteinch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G04050name=GSVIVG01009096001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G32050No description available.2-View


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Gene id
Species
Description
Chromosome
Strand