Anchorpoints

Gene id
TC0008G03240
Organism
Theobroma cacao

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G24340No description available.scaffold_2+View
AL1G20820No description available.scaffold_1-View
AL1G39720No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G43010regulatory particle triple-A ATPase 4A 26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA, regulatory particle triple-A ATPase 4A (RPT4A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View
AT4G04910N-ethylmaleimide sensitive factor AAA-type ATPase family protein N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).4-View
AT5G15250FTSH protease 6 (FTSH6); CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1). FTSH protease 6 Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.5-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G01870No description available.A10-View
BR04G27100No description available.A04-View
BR10G19770No description available.A10+View
BR09G23920No description available.A09+View
BR02G23170No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G13060No description available.Bvchr9.sca026+View
BV3G03020No description available.Bvchr3.sca003+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G14490No description available.Chr8+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00034G03380No description available.CM3.5_scaffold00034+View
CM00014G03300No description available.CM3.5_scaffold00014-View
CM00034G00380No description available.CM3.5_scaffold00034+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00106G00010No description available.supercontig_106+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G21040No description available.scaffold_2+View
CRU_003G15270No description available.scaffold_3-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G04700No description available.scaffold00002-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0010G20260No description available.scaffold_10+View
EG0001G16040No description available.scaffold_1-View
EG0007G19980No description available.scaffold_7-View
EG0006G12950No description available.scaffold_6-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G23560Spastin (probable)LG4-View
FV2G0102026S protease regulatory subunit S10B (CADp44) (putative)LG2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G37220No description available.Gm17-View
GM08G02261No description available.Gm08-View
GM06G01200No description available.Gm06+View
GM04G03180No description available.Gm04+View
GM14G07750No description available.Gm14+View
GM04G39181No description available.Gm04+View
GM06G03230No description available.Gm06+View
GM11G27200No description available.Gm11+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G27160No description available.Chr09+View
GR01G02220No description available.Chr01-View
GR09G19890No description available.Chr09+View
GR05G10990No description available.Chr05-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G002220No description available.chr5-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD10G007570No description available.10-View
MD09G003720No description available.9-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06089G00560No description available.scaffold06089+View
ME09657G00040No description available.scaffold09657-View
ME07012G00970No description available.scaffold07012-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G11226026S proteasome regulatory particle triple-A ATPase proteinchr3-View
MT3G11723026S proteasome regulatory particle triple-A ATPase proteinchr3-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS05G50750AAA family ATPase, putative, expressed5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G35550No description available.scaffold_1+View
PPE_008G10870No description available.scaffold_8+View
PPE_002G29070No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G23170No description available.Chr05-View
PT09G12050No description available.Chr09+View
PT02G03140No description available.Chr02+View
PT05G09330No description available.Chr05+View
PT04G15860No description available.Chr04-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04480No description available.30170-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G05404026S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG)%3B contains Interpro domain(s) IPR005937 26S proteasome subunit P45ch10-View
SL01G10994026S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG)%3B contains Interpro domain(s) IPR005937 26S proteasome subunit P45ch01-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST07G022420ATP-dependent zinc metalloprotease FtsH 4 (AHRD V1 ***- A0YZM4_LYNSP); contains Interpro domain(s) IPR005936 Peptidase M41, FtsHchr07-View
ST01G04738026S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005937 26S proteasome subunit P45chr01-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G04050similar to AT4G04910|NSF (N-ethylmaleimide sensitive factor)ch6-1+View
TP3G14660similar to AT3G16290|EMB2083 (embryo defective 2083)ch3-1-View
TP5G30570similar to AT1G45000|26S proteasome regulatory complex subunit p42D, putativech5-7+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G09480name=GSVIVG01009774001;chr18-View
VV03G02950name=GSVIVG01023828001;chr3+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM08G11410No description available.8-View
ZM08G23890No description available.8-View
ZM08G06220No description available.8-View


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Gene id
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Description
Chromosome
Strand