PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: TC0003G05420
Organism: Theobroma cacao

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL2G24690	No description available.	scaffold_2	-	View
AL7G21810	No description available.	scaffold_7	-	View
AL1G21050	No description available.	scaffold_1	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G20010	beta tubulin tubulin beta-5 chain (TUB5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: tubulin complex, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-1 chain (TAIR:AT1G75780.1); Has 23676 Blast hits to 23579 proteins in 4895 species: Archae - 37; Bacteria - 47; Metazoa - 4468; Fungi - 14216; Plants - 1551; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink). tubulin beta-5 chain	1	-	View
AT1G75780	tubulin beta-1 chain beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses tubulin beta-1 chain (TUB1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain (TAIR:AT1G20010.1); Has 23671 Blast hits to 23575 proteins in 4891 species: Archae - 36; Bacteria - 42; Metazoa - 4470; Fungi - 14216; Plants - 1549; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).	1	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL04G10540	No description available.	Chr4	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00001G02250	No description available.	CM3.5_scaffold00001	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00003G03970	No description available.	supercontig_3	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_002G21340	No description available.	scaffold_2	-	View
CRU_001G18720	No description available.	scaffold_1	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00039G00120	No description available.	scaffold00039	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV5G16740	Tubulin beta-4 chain	LG5	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM05G33830	No description available.	Gm05	-	View
GM08G05850	No description available.	Gm08	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR02G12340	No description available.	Chr02	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ4G051290	No description available.	chr4	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD14G021890	No description available.	14	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME06631G00380	No description available.	scaffold06631	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT8G107250	tubulin	chr8	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_005G23370	No description available.	scaffold_5	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT12G04760	No description available.	Chr12	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G118760	Tubulin beta chain (AHRD V1 ***- B9HNJ2_POPTR)%3B contains Interpro domain(s) IPR002453 Beta tubulin	ch03	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST03G032250	Tubulin beta chain (AHRD V1 ***- C5NU06_LOTJA); contains Interpro domain(s) IPR002453 Beta tubulin	chr03	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP5G30900	similar to AT1G75780\|TUB1	ch5-7	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV17G07110	name=GSVIVG01008426001;	chr17	-	View