PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: TC0001G01260
Organism: Theobroma cacao

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
TC0008G04700	No description available.	scaffold_8	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G38570	No description available.	scaffold_3	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G35900	FD; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper motif 27 (TAIR:AT2G17770.2); Has 747 Blast hits to 421 proteins in 73 species: Archae - 0; Bacteria - 6; Metazoa - 144; Fungi - 40; Plants - 193; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink). Basic-leucine zipper (bZIP) transcription factor family protein bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.	4	+	View
AT2G17770	Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT. basic region/leucine zipper motif 27 (BZIP27); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT4G35900.1). basic region/leucine zipper motif 27	2	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR03G54980	No description available.	A03	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL10G01640	No description available.	Chr10	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00021G00550	No description available.	CM3.5_scaffold00021	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00026G02880	No description available.	supercontig_26	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_007G04050	No description available.	scaffold_7	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0006G13630	No description available.	scaffold_6	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV1G13120	Protein FD (AtbZIP14) (probable)	LG1	-	View
FV2G38100	Protein FD (AtbZIP14) (probable)	LG2	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM02G05100	No description available.	Gm02	-	View
GM06G02470	No description available.	Gm06	+	View
GM04G02420	No description available.	Gm04	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR09G19250	No description available.	Chr09	+	View
GR02G12220	No description available.	Chr02	+	View
GR07G19180	No description available.	Chr07	+	View
GR03G00700	No description available.	Chr03	+	View
GR09G26930	No description available.	Chr09	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ2G029010	No description available.	chr2	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD15G017770	No description available.	15	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME07520G02960	No description available.	scaffold07520	-	View
ME06512G01470	No description available.	scaffold06512	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT5G022780	basic leucine zipper transcription factor	chr5	-	View
MT8G075130	BZIP transcription factor	chr8	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS09G36910	bZIP transcription factor domain containing protein, expressed	9	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_007G19380	No description available.	scaffold_7	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G083520	BZIP transcription factor (AHRD V1 -* Q32WR6_MALDO)%3B contains Interpro domain(s) IPR011616 bZIP transcription factor%2C bZIP-1	ch02	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST02G026810	BZIP transcription factor (AHRD V1 -- Q32WR6_MALDO); contains Interpro domain(s) IPR004827 Basic-leucine zipper (bZIP) transcription factor	chr02	+	View
ST02G009830	BZIP transcription factor (AHRD V1 -* Q32WR6_MALDO); contains Interpro domain(s) IPR011700 Basic leucine zipper	chr02	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G33680	similar to AT4G35900\|FD	ch7-6	+	View
TP3G31180	similar to AT2G17770\|ATBZIP27	ch3-6	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV18G11140	name=GSVIVG01009970001;	chr18	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM07G31130	delayed flowering1	7	-	View