Anchorpoints
- Gene id
- ST10G026400
- Organism
- Solanum tuberosum
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST01G007370 | RING-H2 zinc finger protein (AHRD V1 *--* Q0WT62_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr01 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL6G21610 | No description available. | scaffold_6 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G22000 | RING-H2 group F2A RING-H2 group F2A (RHF2A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 group F1A (TAIR:AT4G14220.1); Has 8047 Blast hits to 5903 proteins in 316 species: Archae - 0; Bacteria - 141; Metazoa - 1863; Fungi - 401; Plants - 2610; Viruses - 42; Other Eukaryotes - 2990 (source: NCBI BLink). encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. | 5 | + | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00004G01680 | No description available. | scaffold00004 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G09390 | No description available. | A03 | + | View |
BR02G10800 | No description available. | A02 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G16090 | No description available. | Chr10 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00011G05030 | No description available. | CM3.5_scaffold00011 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00222G00240 | No description available. | supercontig_222 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00018G01340 | No description available. | scaffold00018 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0011G15760 | No description available. | scaffold_11 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV6G28460 | E3 ubiquitin-protein ligase At3g02290 (probable) | LG6 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM19G38930 | No description available. | Gm19 | - | View |
GM13G38720 | No description available. | Gm13 | + | View |
GM12G31700 | No description available. | Gm12 | - | View |
GM03G36270 | No description available. | Gm03 | - | View |
GM02G34840 | No description available. | Gm02 | + | View |
GM10G10560 | No description available. | Gm10 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR01G12670 | No description available. | Chr01 | + | View |
GR06G14740 | No description available. | Chr06 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD14G004160 | No description available. | 14 | - | View |
MD12G003910 | No description available. | 12 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME02892G01050 | No description available. | scaffold02892 | - | View |
ME08542G00600 | No description available. | scaffold08542 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT7G106770 | E3 ubiquitin-protein ligase RHF2A-like protein | chr7 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G15130 | No description available. | scaffold_6 | - | View |
PPE_007G11250 | No description available. | scaffold_7 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT06G20020 | No description available. | Chr06 | + | View |
PT16G06640 | No description available. | Chr16 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29333G00430 | No description available. | 29333 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G006810 | RING-H2 zinc finger protein (Fragment) (AHRD V1 *-*- A1IW10_9LAMI)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch01 | + | View |
SL10G081710 | RING finger protein 43 (AHRD V1 *-*- RNF43_HUMAN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch10 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0009G26370 | No description available. | scaffold_9 | - | View |
TC0005G10770 | No description available. | scaffold_5 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP6G23190 | similar to AT5G22000|RHF2A (RING-H2 GROUP F2A) | ch6-6 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM04G32520 | No description available. | 4 | - | View |