Anchorpoints

Gene id
ST08G028060
Organism
Solanum tuberosum

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
ST03G013410RING finger protein 44 (AHRD V1 *-*- RNF44_DANRE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr03+View
ST01G033250RING finger protein 44 (AHRD V1 *-*- RNF44_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr01-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G17700No description available.scaffold_8+View
AL5G32610No description available.scaffold_5-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G53110RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46495.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G05990No description available.Bvchr5.sca002+View
BV3G02310No description available.Bvchr3.sca003+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL07G18270No description available.Chr7+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00027G02370No description available.CM3.5_scaffold00027-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00096G00080No description available.supercontig_96-View
CP00003G00660No description available.supercontig_3-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G13010No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G04270No description available.scaffold00001-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0001G12020No description available.scaffold_1+View
EG0004G13920No description available.scaffold_4-View
EG0005G07330No description available.scaffold_5-View
EG0005G00500No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G05900RING-H2 finger protein ATL1E (probable)LG7+View
FV5G05180RING-H2 finger protein ATL1E (probable)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM07G06201No description available.Gm07+View
GM06G13270No description available.Gm06-View
GM05G36870No description available.Gm05-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G13340No description available.Chr04+View
GR08G25430No description available.Chr08-View
GR03G07930No description available.Chr03+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G013610No description available.chr1-View
LJ4G046850No description available.chr4+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G010100No description available.6+View
MD01G021740No description available.1-View
MD02G016970No description available.2-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06089G00100No description available.scaffold06089+View
ME03175G00260No description available.scaffold03175-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G091200RING-H2 finger ATL21B-like protein C putativechr3-View
MT5G009190RING-H2 finger ATL21A-like proteinchr5-View
MT8G099495RING-H2 finger ATL21A-like proteinchr8+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G29880No description available.scaffold_2+View
PPE_002G18080No description available.scaffold_2-View
PPE_005G12700No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G13990No description available.Chr03-View
PT02G17030No description available.Chr02-View
PT14G09820No description available.Chr14-View
PT01G09170No description available.Chr01+View
PT15G01780No description available.Chr15+View
PT12G01140No description available.Chr12+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30169G02740No description available.30169+View
RC30190G05430No description available.30190-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G095810Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech01-View
SL08G082310RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech08-View
SL03G083460RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G34090No description available.scaffold_1+View
TC0003G19600No description available.scaffold_3-View
TC0003G29270No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G15280No description available.ch6-6+View
TP5G01650similar to AT2G25410|protein binding / zinc ion bindingch5-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G04580name=GSVIVG01019530001;chr2-View
VV16G00040name=GSVIVG01001021001;chr16+View


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Gene id
Species
Description
Chromosome
Strand