Anchorpoints

Gene id
ST08G024490
Organism
Solanum tuberosum

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G33000No description available.scaffold_4+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G45140plant VAP homolog 12 plant VAP homolog 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 140; Plants - 434; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.2+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G08430No description available.Bvchr5_un.sca001+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G03850No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G05020No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00029G01460No description available.supercontig_29-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G26780No description available.scaffold_4+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00053G00630No description available.scaffold00053+View
CS00001G01320No description available.scaffold00001+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G03890No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G15100Vesicle-associated membrane protein-associated protein C16G5.05c (VAMP-associated protein C16G5.05c) (probable)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G15010No description available.Gm17-View
GM11G03480No description available.Gm11-View
GM01G41901No description available.Gm01+View
GM05G04580No description available.Gm05-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G17080No description available.Chr03-View
GR07G08900No description available.Chr07+View
GR06G21350No description available.Chr06-View
GR08G23570No description available.Chr08+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G034660No description available.chr2+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11341G00040No description available.scaffold11341-View
ME11581G00390No description available.scaffold11581-View
ME08265G04940No description available.scaffold08265+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G101020VAMP-associated proteinchr4+View
MT5G012420VAMP-associated proteinchr5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G44300MSP domain containing protein, expressed2+View
OS04G46780MSP domain containing protein, expressed4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G07820No description available.scaffold_5+View
PPE_002G13570No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G07610No description available.Chr03-View
PT03G08250No description available.Chr03+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30174G00800No description available.30174+View
RC29916G00160No description available.29916+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G078690Vesicle-associated membrane protein-associated protein (AHRD V1 **-- Q1ANA7_WHEAT)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G24960No description available.scaffold_3+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G00450name=GSVIVG01001317001;chr2-View


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Gene id
Species
Description
Chromosome
Strand