Anchorpoints

Gene id
ST07G028440
Organism
Solanum tuberosum

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G13630No description available.scaffold_3-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G13170ATSPO11-1; CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), Meiotic recombination, Spo11 (InterPro:IPR013048), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT5G02820.1); Has 908 Blast hits to 908 proteins in 313 species: Archae - 216; Bacteria - 16; Metazoa - 170; Fungi - 122; Plants - 151; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink). Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase. Spo11/DNA topoisomerase VI, subunit A protein3-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV4G02390No description available.Bvchr4.sca016-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G21540No description available.Chr9+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00072G00440No description available.CM3.5_scaffold00072+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00012G01620No description available.supercontig_12+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G11990No description available.scaffold_3-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00070G00080No description available.scaffold00070-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G42610Meiotic recombination protein SPO11-1 (AtSPO11-1) (similar to)LG2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G46920No description available.Gm02-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G09910No description available.Chr02-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD11G016320No description available.11+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03332G00650No description available.scaffold03332-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G095040meiotic recombination SPO11-like proteinchr5+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G24810No description available.scaffold_4-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G36670No description available.Chr01-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29629G00410No description available.29629+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL07G065430DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI)%3B contains Interpro domain(s) IPR013048 Meiotic recombination Spo11ch07-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0007G01470No description available.scaffold_7+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G11340similar to AT3G13170|ATSPO11-1ch3-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G05430name=GSVIVG01014659001;chr19-View


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Gene id
Species
Description
Chromosome
Strand