PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: ST04G034080
Organism: Solanum tuberosum

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL6G37370	No description available.	scaffold_6	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G21100	damaged DNA binding protein 1B damaged DNA binding protein 1B (DDB1B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1459 Blast hits to 1199 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 391; Plants - 235; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink). One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase.	4	-	View
AT4G05420	Structurally similar to damaged DNA binding proteins. DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. DDB1a is shown to be RUB-modified. damaged DNA binding protein 1A damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 1490 Blast hits to 1182 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 374; Plants - 231; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).	4	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR09G23450	No description available.	A09	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_006G32100	No description available.	scaffold_6	+	View
CRU_007G19390	No description available.	scaffold_7	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G19180	similar to AT4G21100\|DDB1B (Damaged DNA Binding Protein 1 B)	ch7-4	-	View
TP6G03670	similar to AT4G05420\|DDB1A (DAMAGED DNA BINDING PROTEIN 1A)	ch6-1	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM08G11790	No description available.	8	+	View