Anchorpoints

Gene id
ST02G028990
Organism
Solanum tuberosum

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
ST02G010810UV excision repair protein RAD23-like protein A (AHRD V1 **-- E2B9B5_9HYME); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23chr02-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G01710No description available.scaffold_3-View
AL6G15940No description available.scaffold_6-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G16090INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 634; Fungi - 179; Plants - 321; Viruses - 27; Other Eukaryotes - 150 (source: NCBI BLink).5-View
AT3G02540Rad23 UV excision repair protein family RADIATION SENSITIVE23C (RAD23C); FUNCTIONS IN: ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT5G38470.1); Has 42093 Blast hits to 23907 proteins in 1708 species: Archae - 163; Bacteria - 9780; Metazoa - 10471; Fungi - 4857; Plants - 6883; Viruses - 1548; Other Eukaryotes - 8391 (source: NCBI BLink). Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.3-View
AT5G38470Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Rad23 UV excision repair protein family5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G00230No description available.A02+View
BR10G19130No description available.A10+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV2G07070No description available.Bvchr2.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G23870No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G05720No description available.CM3.5_scaffold00016-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G01550No description available.scaffold_3-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00071G00530No description available.scaffold00071-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G40730Putative DNA repair protein RAD23-4 (AtRAD23-4) (similar to)LG6-View
FV0G01810Putative DNA repair protein RAD23-3 (AtRAD23-3) (similar to)scf0513158+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM20G24850No description available.Gm20-View
GM10G42180No description available.Gm10+View
GM18G53470No description available.Gm18+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G041130No description available.chr1+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G006160No description available.9-View
MD13G002830No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06871G00730No description available.scaffold06871+View
ME04043G00930No description available.scaffold04043+View
ME08359G00180No description available.scaffold08359+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G407040RAD23 UV excision repair family proteinchr7-View
MT1G111090RAD23 UV excision repair family proteinchr1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G31920No description available.scaffold_1-View
PPE_003G21740No description available.scaffold_3+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G11970No description available.Chr08-View
PT17G11400No description available.Chr17-View
PT04G10070No description available.Chr04+View
PT10G12620No description available.Chr10-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30205G00110No description available.30205+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G063130UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY)%3B contains Interpro domain(s) IPR004806 UV excision repair protein Rad23ch02-View
SL02G085840UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY)%3B contains Interpro domain(s) IPR000626 Ubiquitinch02-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G14150No description available.scaffold_4+View
TC0002G35440No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G03580similar to AT5G38470|DNA repair protein RAD23, putativech7-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G07860name=GSVIVG01011907001;chr1-View
VV14G08170name=GSVIVG01031048001;chr14+View


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Gene id
Species
Description
Chromosome
Strand