Anchorpoints

Gene id
ST02G028760
Organism
Solanum tuberosum

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
ST03G006460Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL); contains Interpro domain(s) IPR001356 Homeoboxchr03+View
ST02G010560Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL); contains Interpro domain(s) IPR001356 Homeoboxchr02-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G33940No description available.scaffold_8-View
AL7G04060No description available.scaffold_7+View
AL3G39690No description available.scaffold_3-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G66700homeobox 53 (HB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. homeobox 535+View
AT4G36740Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. homeobox protein 40 homeobox protein 40 (HB40); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: ovule, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G18550.1); Has 8534 Blast hits to 8531 proteins in 458 species: Archae - 0; Bacteria - 0; Metazoa - 6212; Fungi - 217; Plants - 1981; Viruses - 4; Other Eukaryotes - 120 (source: NCBI BLink).4-View
AT2G18550Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. homeobox protein 21 homeobox protein 21 (HB21); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 7525 Blast hits to 7522 proteins in 427 species: Archae - 0; Bacteria - 0; Metazoa - 5302; Fungi - 235; Plants - 1881; Viruses - 3; Other Eukaryotes - 104 (source: NCBI BLink).2-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G09670No description available.A09+View
BR08G18760No description available.A08-View
BR07G11770No description available.A07-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL07G10380No description available.Chr7+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00031G00160No description available.CM3.5_scaffold00031-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G03330No description available.scaffold_7+View
CRU_003G31560No description available.scaffold_3-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G10860No description available.scaffold_8+View
EG0009G20870No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G38050Homeobox-leucine zipper protein ATHB-40 (putative)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G06560No description available.Gm02-View
GM11G06940No description available.Gm11+View
GM01G38390No description available.Gm01-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G01660No description available.Chr03-View
GR07G20600No description available.Chr07-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G013030No description available.2-View
MD15G019700No description available.15-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME09260G00250No description available.scaffold09260-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G019650homeobox leucine zipper proteinchr5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT07G02950No description available.Chr07+View
PT05G12610No description available.Chr05-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29646G00140No description available.29646+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G085630Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL)%3B contains Interpro domain(s) IPR001356 Homeoboxch02+View
SL02G062960Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL)%3B contains Interpro domain(s) IPR001356 Homeoboxch02-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G03800No description available.scaffold_1-View
TC0002G23220No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G30000similar to AT5G66700|HB53ch2-4-View
TP3G32030similar to AT2G18550|HB-2 (HOMEOBOX-2)ch3-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G02610name=GSVIVG01019012001;chr4+View


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Gene id
Species
Description
Chromosome
Strand