PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: ST02G012920
Organism: Solanum tuberosum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
ST02G034190	UDP-glucose 6-dehydrogenase (AHRD V1 ***- B6TBY8_MAIZE); contains Interpro domain(s) IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal	chr02	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL6G15310	No description available.	scaffold_6	-	View
AL3G01110	No description available.	scaffold_3	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G29360	UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT5G39320.1); Has 13454 Blast hits to 13430 proteins in 2148 species: Archae - 313; Bacteria - 7048; Metazoa - 213; Fungi - 99; Plants - 213; Viruses - 14; Other Eukaryotes - 5554 (source: NCBI BLink). Encodes one of four UDP-glucose dehydrogenase UGD) genes. Mutation of this gene in combination with UGD3 leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides. UDP-glucose 6-dehydrogenase family protein	3	-	View
AT3G01010	UDP-glucose/GDP-mannose dehydrogenase family protein UDP-glucose/GDP-mannose dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT5G15490.1); Has 4547 Blast hits to 4540 proteins in 1270 species: Archae - 101; Bacteria - 2703; Metazoa - 193; Fungi - 72; Plants - 179; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).	3	+	View
AT5G15490	UDP-glucose 6-dehydrogenase family protein Encodes one of four UDP-glucose dehydrogenase UGD) genes. Mutation of this gene in combination with UGD2 leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides. UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, cell wall, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13373 Blast hits to 13344 proteins in 2170 species: Archae - 309; Bacteria - 7111; Metazoa - 214; Fungi - 99; Plants - 213; Viruses - 14; Other Eukaryotes - 5413 (source: NCBI BLink).	5	-	View

Amborella trichopoda

Gene id	Description	Chromosome	Strand	Multiplicon
ATR_00110G00380	No description available.	scaffold00110	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR09G29890	No description available.	A09	+	View
BR03G06420	No description available.	A03	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00030G01380	No description available.	CM3.5_scaffold00030	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00014G01610	No description available.	supercontig_14	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_005G07490	No description available.	scaffold_5	-	View
CRU_007G35310	No description available.	scaffold_7	-	View
CRU_001G23510	No description available.	scaffold_1	-	View
CRU_003G01100	No description available.	scaffold_3	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM08G26520	UDP-glucose 6-dehydrogenase 1	Gm08	-	View
GM18G50000	UDP-glucose 6-dehydrogenase 1	Gm18	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR07G08180	No description available.	Chr07	-	View
GR08G17790	No description available.	Chr08	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT04G11860	No description available.	Chr04	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G067080	UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI)%3B contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation and substrate-binding	ch02	-	View
SL02G088690	UDP-glucose 6-dehydrogenase (AHRD V1 **** B6TBY8_MAIZE)%3B contains Interpro domain(s) IPR001732 UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal	ch02	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0004G09670	No description available.	scaffold_4	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G02670	similar to AT5G39320\|UDP-glucose 6-dehydrogenase, putative	ch7-1	-	View
TP2G17950	similar to AT3G29360\|UDP-glucose 6-dehydrogenase, putative	ch2-4	-	View
TP6G28610	similar to AT5G15490\|UDP-glucose 6-dehydrogenase, putative	ch6-6	+	View
TP1G22210	similar to AT1G26570\|UGD1 (UDP-GLUCOSE DEHYDROGENASE 1)	ch1-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G02960	name=GSVIVG01011507001;	chr14	-	View