Anchorpoints

Gene id
SL12G088740
Organism
Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL04G078680RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View
SL01G107930RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech01+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G07020No description available.scaffold_7+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G67120RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View
AT1G45180RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G42940.1); Has 9233 Blast hits to 9191 proteins in 302 species: Archae - 0; Bacteria - 44; Metazoa - 2582; Fungi - 701; Plants - 4328; Viruses - 54; Other Eukaryotes - 1524 (source: NCBI BLink).1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G38950No description available.A06+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G15730No description available.Chr8-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G01940No description available.CM3.5_scaffold00014+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00021G01720No description available.supercontig_21+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G05690No description available.scaffold_8+View
CRU_008G26550No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00006G01930No description available.scaffold00006+View
CS00002G02710No description available.scaffold00002+View
CS00065G00310No description available.scaffold00065-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G01780No description available.scaffold_6+View
EG0006G19020No description available.scaffold_6+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G33580E3 ubiquitin-protein ligase arkadia-A (probable)LG2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G04410No description available.Gm06-View
GM17G35940No description available.Gm17+View
GM04G04210No description available.Gm04-View
GM17G19315No description available.Gm17+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G02150No description available.Chr10+View
GR07G21490No description available.Chr07-View
GR05G10170No description available.Chr05+View
GR08G02410No description available.Chr08+View
GR08G07740No description available.Chr08-View
GR09G21390No description available.Chr09-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03484G00280No description available.scaffold03484+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G019200zinc finger (C3HC4-type RING finger) family proteinchr1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G43780No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G10010No description available.Chr09+View
PT02G12430No description available.Chr02+View
PT05G13990No description available.Chr05-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G01970No description available.30170+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G045080Zinc/RING finger protein 3 (AHRD V1 *-*- ZNRF3_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr01+View
ST04G031620Zinc finger protein (AHRD V1 ***- Q00M69_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View
ST12G026890Zinc finger protein (AHRD V1 ***- Q00M69_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr12+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G05620No description available.scaffold_1-View
TC0008G00380No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G28780similar to AT2G15530|zinc finger (C3HC4-type RING finger) family proteinch3-5+View
TP2G07690similar to AT5G42940|zinc finger (C3HC4-type RING finger) family proteinch2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G05290name=GSVIVG01022103001;chr7-View
VV18G06900name=GSVIVG01009466001;chr18+View


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Gene id
Species
Description
Chromosome
Strand