Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- SL12G009170
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL06G062980 | U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA)%3B contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein%2C eukaryotic and archaea-type%2C core | ch06 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL1G20070 | No description available. | scaffold_1 | + | View |
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G19120 | Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G14080.2); Has 1149 Blast hits to 1149 proteins in 232 species: Archae - 65; Bacteria - 0; Metazoa - 426; Fungi - 329; Plants - 203; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). | 1 | + | View |
Amborella trichopoda
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ATR_00131G00740 | No description available. | scaffold00131 | + | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV7G02640 | No description available. | Bvchr7.sca021 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL07G11700 | No description available. | Chr7 | + | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_001G17960 | No description available. | scaffold_1 | + | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00013G02210 | No description available. | scaffold00013 | - | View |
| CS00032G00180 | No description available. | scaffold00032 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV1G10620 | Probable U6 snRNA-associated Sm-like protein LSm1 | LG1 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM16G01160 | No description available. | Gm16 | + | View |
| GM07G04580 | No description available. | Gm07 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR10G09010 | No description available. | Chr10 | + | View |
| GR09G03640 | No description available. | Chr09 | + | View |
| GR01G01610 | No description available. | Chr01 | + | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ6G015810 | No description available. | chr6 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD02G007830 | No description available. | 2 | - | View |
| MD15G016050 | No description available. | 15 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME05875G01260 | No description available. | scaffold05875 | + | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT2G042700 | small nuclear ribonucleoprotein | chr2 | + | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_003G02470 | No description available. | scaffold_3 | - | View |
| PPE_007G21540 | No description available. | scaffold_7 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT01G16660 | No description available. | Chr01 | - | View |
| PT03G06840 | No description available. | Chr03 | + | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC29739G01680 | No description available. | 29739 | - | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST12G008830 | Small nuclear ribonucleoprotein (AHRD V1 *-*- C6HK85_AJECH); contains Interpro domain(s) IPR001163 Like-Sm ribonucleoprotein, core | chr12 | - | View |
| ST06G022020 | U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 **-- E2ARW6_9HYME); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core | chr06 | + | View |
| ST03G034710 | U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 ***- E2ARW6_9HYME); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core | chr03 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0009G07050 | No description available. | scaffold_9 | - | View |
| TC0006G12280 | No description available. | scaffold_6 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV09G02180 | name=GSVIVG01016726001; | chr9 | - | View |
| VV11G02310 | name=GSVIVG01015051001; | chr11 | - | View |