PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: SL11G011560
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL2G13100	No description available.	scaffold_2	-	View
AL5G00890	No description available.	scaffold_5	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G66170	encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. RING/FYVE/PHD zinc finger superfamily protein MALE MEIOCYTE DEATH 1 (MMD1); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: microsporogenesis, regulation of transcription, DNA-dependent, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G01810.1); Has 932 Blast hits to 913 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 337; Fungi - 321; Plants - 250; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).	1	-	View
AT2G01810	RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). RING/FYVE/PHD zinc finger superfamily protein	2	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_002G11380	No description available.	scaffold_2	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM02G41020	No description available.	Gm02	-	View
GM14G39310	No description available.	Gm14	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD09G025140	No description available.	9	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME07520G00340	No description available.	scaffold07520	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT5G077750	PHD finger protein MALE meiocyte DEATH protein	chr5	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_003G14660	No description available.	scaffold_3	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST11G007850	PHD finger family protein (AHRD V1 ***- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type	chr11	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP5G21230	similar to AT1G66170\|MMD1 (MALE MEIOCYTE DEATH 1)	ch5-5	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G06090	name=GSVIVG01030666001;	chr14	+	View