Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL03G119040Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-* B4FKM1_MAIZE)%3B contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat%2C regionch03-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G19570No description available.scaffold_3-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G18080Transducin/WD40 repeat-like superfamily protein Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. Knockout mutants show insensitivity to gibberellin in GA-induced seed germination. ATARCA; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosolic ribosome, chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 86693 Blast hits to 36128 proteins in 955 species: Archae - 98; Bacteria - 10140; Metazoa - 33986; Fungi - 19643; Plants - 11429; Viruses - 3; Other Eukaryotes - 11394 (source: NCBI BLink).1+View
AT1G48630receptor for activated C kinase 1B (RACK1B_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1C (TAIR:AT3G18130.1); Has 89864 Blast hits to 37441 proteins in 950 species: Archae - 80; Bacteria - 10219; Metazoa - 35696; Fungi - 20361; Plants - 11462; Viruses - 9; Other Eukaryotes - 12037 (source: NCBI BLink). Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C. receptor for activated C kinase 1B1-View
AT3G18130receptor for activated C kinase 1C (RACK1C_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 88582 Blast hits to 37057 proteins in 965 species: Archae - 74; Bacteria - 10338; Metazoa - 34853; Fungi - 20136; Plants - 11319; Viruses - 6; Other Eukaryotes - 11856 (source: NCBI BLink). Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B. receptor for activated C kinase 1C3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G12850No description available.A06+View
BR05G25580No description available.A05+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL06G15020No description available.Chr6-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00003G04250No description available.supercontig_3+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G17070No description available.scaffold_3-View
CRU_001G35810No description available.scaffold_1-View
CRU_001G16980No description available.scaffold_1+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G18760No description available.scaffold_11+View
EG0002G07120No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G16990Guanine nucleotide-binding protein subunit beta-like protein (similar to)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G34070No description available.Gm05-View
GM08G05610No description available.Gm08+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G28880No description available.Chr08+View
GR06G19260No description available.Chr06-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G018870No description available.6+View
MD14G021690No description available.14+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G23120No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G04960No description available.Chr12-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G032510Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-* B6SJ21_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, regionchr03-View
ST06G025890Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-* B6SJ21_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, regionchr06-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G35600similar to AT1G48630|RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B)ch1-2-View
TP3G16240similar to AT3G18130|RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)ch3-1-View
TP1G16100similar to AT1G18080|ATARCAch1-1+View


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Gene id
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Description
Chromosome
Strand