Anchorpoints

Gene id
SL06G066730
Organism
Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL03G120260Coatomer beta%26apos subunit (AHRD V1 ***- C4YSS2_CANAW)%3B contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat%2C regionch03+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G47340No description available.scaffold_1+View
AL3G16980No description available.scaffold_3-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G15980Coatomer, beta' subunit Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1).3-View
AT1G79990structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink). structural molecules1+View
AT1G52360Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3). Coatomer, beta' subunit1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G17830No description available.A07+View
BR05G17310No description available.A05-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G16540No description available.Bvchr9.sca026-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G01900No description available.Chr9+View
CL07G13190No description available.Chr7+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00067G00040No description available.CM3.5_scaffold00067-View
CM00018G01840No description available.CM3.5_scaffold00018-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G14950No description available.scaffold_3-View
CRU_001G39430No description available.scaffold_1+View
CRU_002G26070No description available.scaffold_2-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G25260No description available.scaffold_6-View
EG0010G25530No description available.scaffold_10+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G16530Coatomer subunit beta'-1 (Beta'-COP 1) (similar to)LG6+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G22140No description available.Gm08+View
GM15G01680No description available.Gm15-View
GM13G43680No description available.Gm13-View
GM07G03890No description available.Gm07-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G13280No description available.Chr09-View
GR06G09900No description available.Chr06+View
GR11G07720No description available.Chr11+View
GR02G05890No description available.Chr02-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD17G015640No description available.17+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME02196G00200No description available.scaffold02196-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G102267coatomer subunit beta-like proteinchr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G05820No description available.scaffold_3+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G17920No description available.Chr01-View
PT03G05630No description available.Chr03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST06G023220Coatomer subunit beta&apos (AHRD V1 **-- E2C5N9_9HYME); contains Interpro domain(s) IPR016453 Coatomer, beta' subunitchr06+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G08580No description available.scaffold_6-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G14330similar to AT3G15980|coatomer protein complex, subunit beta 2 (beta prime), putativech3-1-View
TP1G38970similar to AT1G52360|coatomer protein complex, subunit beta 2 (beta prime), putativech1-2+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV09G05310name=GSVIVG01017113001;chr9-View


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Description
Chromosome
Strand