Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G24980No description available.scaffold_2-View
AL1G21370No description available.scaffold_1-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G20340DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, response to chemical stimulus, copper ion homeostasis, negative regulation of translation, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1); Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146; Bacteria - 416; Metazoa - 0; Fungi - 2; Plants - 206; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink). recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis. Mutation of this gene does not have obvious effect on photosynthesis. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane. Cupredoxin superfamily protein1-View
AT1G76100One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions. Mutation of this gene does not have obvious effect on photosynthesis. plastocyanin 1 plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G31300No description available.A07-View
BR07G10450No description available.A07+View
BR06G14680No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G16680No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM01596G04450No description available.CM3.5_scaffold01596+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00026G02580No description available.supercontig_26+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G19030No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G06100No description available.scaffold00002-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G37840Plastocyanin, chloroplastic, Precursor (putative)LG2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G02300No description available.Gm06+View
GM04G02240No description available.Gm04+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G19080No description available.Chr09+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G014320No description available.12+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME09683G00030No description available.scaffold09683-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G114850plastocyaninchr3-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G36740No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G01600No description available.Chr02+View
PT05G24610No description available.Chr05-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G06110No description available.30170-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G035400Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR002387 Plastocyanin Plastocyaninchr04-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0008G05050No description available.scaffold_8-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G18060similar to AT1G20340|DRT112ch1-1-View
TP5G31220similar to AT1G76100|PETE1 (PLASTOCYANIN 1)ch5-7-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G01040name=GSVIVG01008733001;chr18+View


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Gene id
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Description
Chromosome
Strand