Anchorpoints
- Gene id
- SL03G122260
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL06G062980 | U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA)%3B contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein%2C eukaryotic and archaea-type%2C core | ch06 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL3G14860 | No description available. | scaffold_3 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G14080 | Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 1121 Blast hits to 1119 proteins in 232 species: Archae - 63; Bacteria - 0; Metazoa - 413; Fungi - 327; Plants - 207; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). Small nuclear ribonucleoprotein family protein | 3 | + | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00131G00740 | No description available. | scaffold00131 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR05G28910 | No description available. | A05 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV7G02640 | No description available. | Bvchr7.sca021 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL07G11700 | No description available. | Chr7 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00025G01410 | No description available. | supercontig_25 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_003G13070 | No description available. | scaffold_3 | + | View |
CRU_001G17960 | No description available. | scaffold_1 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00013G02210 | No description available. | scaffold00013 | - | View |
CS00032G00180 | No description available. | scaffold00032 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0010G23910 | No description available. | scaffold_10 | - | View |
EG0006G20070 | No description available. | scaffold_6 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G16090 | U6 snRNA-associated Sm-like protein LSm1 (similar to) | scf0513160 | + | View |
FV1G10620 | Probable U6 snRNA-associated Sm-like protein LSm1 | LG1 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM16G01160 | No description available. | Gm16 | + | View |
GM07G04580 | No description available. | Gm07 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR10G09010 | No description available. | Chr10 | + | View |
GR09G14570 | No description available. | Chr09 | - | View |
GR09G03640 | No description available. | Chr09 | + | View |
GR01G01610 | No description available. | Chr01 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ3G036240 | No description available. | chr3 | - | View |
LJ6G015810 | No description available. | chr6 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME05875G01260 | No description available. | scaffold05875 | + | View |
ME06700G00050 | No description available. | scaffold06700 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT2G042700 | small nuclear ribonucleoprotein | chr2 | + | View |
MT8G021250 | small nuclear ribonucleoprotein | chr8 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_003G02470 | No description available. | scaffold_3 | - | View |
PPE_007G21540 | No description available. | scaffold_7 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G16660 | No description available. | Chr01 | - | View |
PT03G06840 | No description available. | Chr03 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29158G00070 | No description available. | 29158 | + | View |
RC29739G01680 | No description available. | 29739 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST12G008830 | Small nuclear ribonucleoprotein (AHRD V1 *-*- C6HK85_AJECH); contains Interpro domain(s) IPR001163 Like-Sm ribonucleoprotein, core | chr12 | - | View |
ST06G022020 | U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 **-- E2ARW6_9HYME); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core | chr06 | + | View |
ST03G034710 | U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 ***- E2ARW6_9HYME); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core | chr03 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0009G07050 | No description available. | scaffold_9 | - | View |
TC0006G12280 | No description available. | scaffold_6 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP3G12340 | similar to AT3G14080|small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | ch3-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV09G02180 | name=GSVIVG01016726001; | chr9 | - | View |
VV11G02310 | name=GSVIVG01015051001; | chr11 | - | View |