Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL06G062980U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA)%3B contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein%2C eukaryotic and archaea-type%2C corech06+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G14860No description available.scaffold_3+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G14080Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 1121 Blast hits to 1119 proteins in 232 species: Archae - 63; Bacteria - 0; Metazoa - 413; Fungi - 327; Plants - 207; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). Small nuclear ribonucleoprotein family protein3+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00131G00740No description available.scaffold00131+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G28910No description available.A05-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV7G02640No description available.Bvchr7.sca021-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL07G11700No description available.Chr7+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00025G01410No description available.supercontig_25+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G13070No description available.scaffold_3+View
CRU_001G17960No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00013G02210No description available.scaffold00013-View
CS00032G00180No description available.scaffold00032-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0010G23910No description available.scaffold_10-View
EG0006G20070No description available.scaffold_6+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G16090U6 snRNA-associated Sm-like protein LSm1 (similar to)scf0513160+View
FV1G10620Probable U6 snRNA-associated Sm-like protein LSm1LG1+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM16G01160No description available.Gm16+View
GM07G04580No description available.Gm07+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G09010No description available.Chr10+View
GR09G14570No description available.Chr09-View
GR09G03640No description available.Chr09+View
GR01G01610No description available.Chr01+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G036240No description available.chr3-View
LJ6G015810No description available.chr6-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05875G01260No description available.scaffold05875+View
ME06700G00050No description available.scaffold06700+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G042700small nuclear ribonucleoproteinchr2+View
MT8G021250small nuclear ribonucleoproteinchr8+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G02470No description available.scaffold_3-View
PPE_007G21540No description available.scaffold_7-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G16660No description available.Chr01-View
PT03G06840No description available.Chr03+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29158G00070No description available.29158+View
RC29739G01680No description available.29739-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST12G008830Small nuclear ribonucleoprotein (AHRD V1 *-*- C6HK85_AJECH); contains Interpro domain(s) IPR001163 Like-Sm ribonucleoprotein, corechr12-View
ST06G022020U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 **-- E2ARW6_9HYME); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, corechr06+View
ST03G034710U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 ***- E2ARW6_9HYME); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, corechr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G07050No description available.scaffold_9-View
TC0006G12280No description available.scaffold_6+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G12340similar to AT3G14080|small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativech3-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV09G02180name=GSVIVG01016726001;chr9-View
VV11G02310name=GSVIVG01015051001;chr11-View


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Gene id
Species
Description
Chromosome
Strand