Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL02G067260RING finger protein 6 (AHRD V1 *-*- RNF6_HUMAN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech02-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G26790No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G26800RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 9899 Blast hits to 9869 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2681; Fungi - 828; Plants - 5098; Viruses - 14; Other Eukaryotes - 1278 (source: NCBI BLink).1-View
AT1G74620RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1); Has 10007 Blast hits to 9980 proteins in 284 species: Archae - 0; Bacteria - 0; Metazoa - 2594; Fungi - 843; Plants - 5042; Viruses - 48; Other Eukaryotes - 1480 (source: NCBI BLink). RING/U-box superfamily protein1+View
AT2G03000RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 30893 Blast hits to 17053 proteins in 804 species: Archae - 45; Bacteria - 3195; Metazoa - 9909; Fungi - 5711; Plants - 4804; Viruses - 543; Other Eukaryotes - 6686 (source: NCBI BLink).2+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00010G04840No description available.scaffold00010+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G09430No description available.A06-View
BR09G48420No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G02530No description available.Bvchr6.sca028-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G18660No description available.Chr9-View
CL05G25190No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G04290No description available.CM3.5_scaffold00016+View
CM00051G00320No description available.CM3.5_scaffold00051+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G13250No description available.scaffold_1-View
CRU_001G23220No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00003G04410No description available.scaffold00003+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G19290No description available.scaffold_7-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G44300RING-H2 finger protein ATL5P (probable)LG6-View
FV0G05450RING finger protein 126 (probable)scf0513158-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM01G05880No description available.Gm01+View
GM02G12050No description available.Gm02+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G05350No description available.Chr12-View
GR06G01570No description available.Chr06-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G021650No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G004630No description available.13-View
MD17G004150No description available.17+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11581G01580No description available.scaffold11581+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G041310zinc finger C C3HC4 type (RING finger) proteinchr5+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G43740zinc finger, C3HC4 type domain containing protein, expressed7+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G28190No description available.scaffold_1-View
PPE_001G28710No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G12200No description available.Chr04-View
PT08G08720No description available.Chr08+View
PT10G16830No description available.Chr10-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29813G00510No description available.29813+View
RC30147G07520No description available.30147+View
RC28838G00100No description available.28838-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G034820RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr02-View
ST02G013110RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr02-View
ST05G009940RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr05+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G08750No description available.scaffold_4+View
TC0002G34320No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G14040similar to AT2G03000|zinc finger (C3HC4-type RING finger) family proteinch2-4+View
TP1G21990similar to AT1G26800|zinc finger (C3HC4-type RING finger) family proteinch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G11990name=GSVIVG01019972001;chr1+View


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Gene id
Species
Description
Chromosome
Strand