Anchorpoints

Gene id
PT17G09310
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G09130No description available.scaffold_5-View
AL7G39270No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G29380Encodes a TFIIB-related protein expressed in the reproductive organs and seeds. Loss-of-function specifically affects the development of the syncytial endosperm. It is not required for RNA polymerase IV or V activities. Cyclin-like family protein Cyclin-like family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G10330.1); Has 1433 Blast hits to 1431 proteins in 343 species: Archae - 509; Bacteria - 1; Metazoa - 189; Fungi - 171; Plants - 127; Viruses - 11; Other Eukaryotes - 425 (source: NCBI BLink).3-View
AT5G39230TFIIB zinc-binding protein; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Zinc finger, TFIIB-type (InterPro:IPR013137); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G29380.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). TFIIB zinc-binding protein5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G31590No description available.A02+View
BR06G31660No description available.A06+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G07530No description available.scaffold_5-View
CRU_007G35380No description available.scaffold_7-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G42660Transcription initiation factor IIB (probable)LG6+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G04910No description available.Chr12+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G004670No description available.9-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G23530No description available.scaffold_3+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G09850No description available.scaffold_4-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G17970similar to AT3G29380|transcription factor IIB (TFIIB) family proteinch2-4-View


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Gene id
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Description
Chromosome
Strand