Anchorpoints

Gene id
PT08G09200
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT10G16280No description available.Chr10+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G17660No description available.scaffold_2+View
AL1G14690No description available.scaffold_1+View
AL1G27000No description available.scaffold_1-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G69410eukaryotic elongation factor 5A-3 (ELF5A-3); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, translational frameshifting, positive regulation of translational termination, peptidyl-lysine modification to hypusine, positive regulation of translational elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-1 (TAIR:AT1G13950.1); Has 1331 Blast hits to 1330 proteins in 408 species: Archae - 255; Bacteria - 0; Metazoa - 363; Fungi - 252; Plants - 260; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). eukaryotic elongation factor 5A-3 Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410.1+View
AT1G26630Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1331 Blast hits to 1330 proteins in 409 species: Archae - 256; Bacteria - 0; Metazoa - 365; Fungi - 242; Plants - 261; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).1+View
AT1G13950eukaryotic elongation factor 5A-1 Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. eukaryotic elongation factor 5A-1 (ELF5A-1); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, xylem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1356 Blast hits to 1355 proteins in 415 species: Archae - 264; Bacteria - 0; Metazoa - 366; Fungi - 246; Plants - 261; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).1+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00058G00530No description available.scaffold00058+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR08G23320No description available.A08+View
BR09G29950No description available.A09+View
BR07G08250No description available.A07+View
BR07G26180No description available.A07+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G01870No description available.Bvchr6.sca028+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G24930No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G04590No description available.CM3.5_scaffold00016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00770No description available.supercontig_1-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G15050No description available.scaffold_2+View
CRU_001G23440No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00003G04900No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G19010No description available.scaffold_7+View
EG0002G04770No description available.scaffold_2-View
EG0011G20790No description available.scaffold_11-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G04730Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (similar to)scf0513158+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM01G06600No description available.Gm01-View
GM06G21290No description available.Gm06-View
GM05G00780No description available.Gm05+View
GM04G32950No description available.Gm04+View
GM02G12520No description available.Gm02-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G14380No description available.Chr05+View
GR08G17870No description available.Chr08+View
GR03G09870No description available.Chr03-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G029450No description available.chr4-View
LJ2G021140No description available.chr2+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD16G003380No description available.16+View
MD00G250490No description available.MDC010756.328+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME08359G01970No description available.scaffold08359+View
ME04233G00050No description available.scaffold04233+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G042990eukaryotic translation initiation factor 5A4chr5-View
MT4G109130eukaryotic translation initiation factor 5A4chr4-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G40580eukaryotic translation initiation factor 5A, putative, expressed7-View
OS03G55150eukaryotic translation initiation factor 5A, putative, expressed3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G29240No description available.scaffold_1-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30138G01990No description available.30138+View
RC30174G05550No description available.30174+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G115650Eukaryotic translation initiation factor 5A-1 Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI)%3B contains Interpro domain(s) IPR001884 Translation elongation factor%2C IF5Ach03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G029130Eukaryotic translation initiation factor 5A (AHRD V1 **** Q207T7_GYMCO); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5Achr03+View
ST04G005130Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5Achr04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G33700No description available.scaffold_2+View
TC0003G09760No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G22170similar to AT1G26630|FBR12 (FUMONISIN B1-RESISTANT12)ch1-1-View
TP5G24460similar to AT1G69410|ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)ch5-6+View
TP1G12310similar to AT1G13950|ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G03270name=GSVIVG01007954001;chr17-View


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Gene id
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Description
Chromosome
Strand