Anchorpoints
- Gene id
- PT05G23170
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT09G12050 | No description available. | Chr09 | + | View |
PT02G03140 | No description available. | Chr02 | + | View |
PT05G09330 | No description available. | Chr05 | + | View |
PT04G15860 | No description available. | Chr04 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G24340 | No description available. | scaffold_2 | + | View |
AL1G39720 | No description available. | scaffold_1 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G43010 | regulatory particle triple-A ATPase 4A 26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA, regulatory particle triple-A ATPase 4A (RPT4A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | 5 | - | View |
AT4G04910 | N-ethylmaleimide sensitive factor AAA-type ATPase family protein N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). | 4 | - | View |
AT1G45000 | AAA-type ATPase family protein AAA-type ATPase family protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein catabolic process; LOCATED IN: proteasome complex, nucleolus, cell wall, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 40322 Blast hits to 37808 proteins in 3315 species: Archae - 1523; Bacteria - 16702; Metazoa - 5215; Fungi - 3857; Plants - 3490; Viruses - 45; Other Eukaryotes - 9490 (source: NCBI BLink). | 1 | + | View |
AT5G15250 | FTSH protease 6 (FTSH6); CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1). FTSH protease 6 Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation. | 5 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR10G01870 | No description available. | A10 | - | View |
BR04G27100 | No description available. | A04 | - | View |
BR10G19770 | No description available. | A10 | + | View |
BR09G23920 | No description available. | A09 | + | View |
BR02G23170 | No description available. | A02 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV9G13060 | No description available. | Bvchr9.sca026 | + | View |
BV3G03020 | No description available. | Bvchr3.sca003 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G14490 | No description available. | Chr8 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00034G03380 | No description available. | CM3.5_scaffold00034 | + | View |
CM00014G03300 | No description available. | CM3.5_scaffold00014 | - | View |
CM00034G00380 | No description available. | CM3.5_scaffold00034 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G33690 | No description available. | scaffold_1 | + | View |
CRU_002G21040 | No description available. | scaffold_2 | + | View |
CRU_003G15270 | No description available. | scaffold_3 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G04700 | No description available. | scaffold00002 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0010G20260 | No description available. | scaffold_10 | + | View |
EG0001G16040 | No description available. | scaffold_1 | - | View |
EG0007G19980 | No description available. | scaffold_7 | - | View |
EG0006G12950 | No description available. | scaffold_6 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV4G23560 | Spastin (probable) | LG4 | - | View |
FV3G30900 | 26S protease regulatory subunit 6B homolog (putative) | LG3 | + | View |
FV2G01020 | 26S protease regulatory subunit S10B (CADp44) (putative) | LG2 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM17G37220 | No description available. | Gm17 | - | View |
GM08G02261 | No description available. | Gm08 | - | View |
GM06G01200 | No description available. | Gm06 | + | View |
GM04G03180 | No description available. | Gm04 | + | View |
GM14G07750 | No description available. | Gm14 | + | View |
GM04G39181 | No description available. | Gm04 | + | View |
GM06G03230 | No description available. | Gm06 | + | View |
GM11G27200 | No description available. | Gm11 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR09G27160 | No description available. | Chr09 | + | View |
GR01G02220 | No description available. | Chr01 | - | View |
GR09G19890 | No description available. | Chr09 | + | View |
GR05G10990 | No description available. | Chr05 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD10G007570 | No description available. | 10 | - | View |
MD09G003720 | No description available. | 9 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME06089G00560 | No description available. | scaffold06089 | + | View |
ME09657G00040 | No description available. | scaffold09657 | - | View |
ME07012G00970 | No description available. | scaffold07012 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G112260 | 26S proteasome regulatory particle triple-A ATPase protein | chr3 | - | View |
MT3G117230 | 26S proteasome regulatory particle triple-A ATPase protein | chr3 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS05G50750 | AAA family ATPase, putative, expressed | 5 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G35550 | No description available. | scaffold_1 | + | View |
PPE_008G10870 | No description available. | scaffold_8 | + | View |
PPE_002G29070 | No description available. | scaffold_2 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G04480 | No description available. | 30170 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G054040 | 26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG)%3B contains Interpro domain(s) IPR005937 26S proteasome subunit P45 | ch10 | - | View |
SL01G109940 | 26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG)%3B contains Interpro domain(s) IPR005937 26S proteasome subunit P45 | ch01 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST07G022420 | ATP-dependent zinc metalloprotease FtsH 4 (AHRD V1 ***- A0YZM4_LYNSP); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH | chr07 | - | View |
ST01G047380 | 26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005937 26S proteasome subunit P45 | chr01 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0008G03240 | No description available. | scaffold_8 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G33830 | similar to AT1G45000|26S proteasome regulatory complex subunit p42D, putative | ch1-2 | + | View |
TP6G04050 | similar to AT4G04910|NSF (N-ethylmaleimide sensitive factor) | ch6-1 | + | View |
TP3G14660 | similar to AT3G16290|EMB2083 (embryo defective 2083) | ch3-1 | - | View |
TP5G30570 | similar to AT1G45000|26S proteasome regulatory complex subunit p42D, putative | ch5-7 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G09480 | name=GSVIVG01009774001; | chr18 | - | View |
VV03G02950 | name=GSVIVG01023828001; | chr3 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM08G11410 | No description available. | 8 | - | View |
ZM08G23890 | No description available. | 8 | - | View |