Anchorpoints

Gene id
PT04G11480
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT17G10010No description available.Chr17-View
PT10G14030No description available.Chr10+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G15620No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G15790RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 5281 Blast hits to 5274 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 1803; Fungi - 302; Plants - 2328; Viruses - 9; Other Eukaryotes - 839 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G19410No description available.A10-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV2G08450No description available.Bvchr2.sca001-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G01320No description available.scaffold_3+View
CRU_006G13610No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00019G01750No description available.scaffold00019+View
CS00015G00410No description available.scaffold00015-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G17340No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G42010E3 ubiquitin-protein ligase At3g02290 (similar to)LG6+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G04340No description available.Gm19-View
GM13G06840No description available.Gm13-View
GM08G27730No description available.Gm08-View
GM18G50945No description available.Gm18-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G20710No description available.Chr01+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04043G01700No description available.scaffold04043+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G016840RING-finger ubiquitin ligasechr7+View
MT6G015980RING-finger ubiquitin ligasechr6-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G22810No description available.scaffold_3+View
PPE_001G30230No description available.scaffold_1-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G089240Zinc finger family protein (AHRD V1 ***- D7KZF4_ARALY)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech02-View
SL05G012010RING-H2 finger protein (Fragment) (AHRD V1 *-*- Q7X9M1_WHEAT)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech05+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G033640Zinc finger family protein (AHRD V1 **-* D7KZF4_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr02+View
ST05G006020E3 ubiquitin-protein ligase At3g02290 (AHRD V1 *--- RING3_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr05-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G11080No description available.scaffold_4-View
TC0002G32500No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G24180similar to AT5G38895|zinc finger (C3HC4-type RING finger) family proteinch5-6+View
TP6G28330similar to AT5G15790|zinc finger (C3HC4-type RING finger) family proteinch6-6-View
TP3G01350similar to AT3G02290|zinc finger (C3HC4-type RING finger) family proteinch3-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G16070name=GSVIVG01036545001;chr14+View
VV01G10770name=GSVIVG01012252001;chr1+View


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Gene id
Species
Description
Chromosome
Strand