Anchorpoints

Gene id
PT04G05590
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G19320No description available.scaffold_4-View
AL8G02490No description available.scaffold_8-View
AL1G29980No description available.scaffold_1-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G34080Cysteine proteinases superfamily protein Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G29090.1); Has 1344 Blast hits to 1324 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2-View
AT1G29080Papain family cysteine protease Papain family cysteine protease; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G29090.1); Has 7819 Blast hits to 7758 proteins in 724 species: Archae - 63; Bacteria - 249; Metazoa - 3289; Fungi - 4; Plants - 1890; Viruses - 133; Other Eukaryotes - 2191 (source: NCBI BLink).1-View
AT1G06260Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT3G19390.1); Has 7835 Blast hits to 7772 proteins in 746 species: Archae - 66; Bacteria - 269; Metazoa - 3267; Fungi - 4; Plants - 1872; Viruses - 136; Other Eukaryotes - 2221 (source: NCBI BLink). Cysteine proteinases superfamily protein1+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00021G00100No description available.scaffold00021-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G10400No description available.A05+View
BR07G06650No description available.A07+View
BR02G28250No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV8G10910No description available.Bvchr8.sca001+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00007G00540No description available.supercontig_7+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G26160No description available.scaffold_1-View
CRU_001G05290No description available.scaffold_1+View
CRU_008G02000No description available.scaffold_8-View
CRU_004G15210No description available.scaffold_4-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00041G00070No description available.scaffold00041-View
CS00007G00910No description available.scaffold00007-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G09260No description available.scaffold_11+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G22680Fruit bromelain, Precursor (probable)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM15G08840No description available.Gm15+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G15880No description available.Chr10-View
GR11G03420No description available.Chr11+View
GR09G16320No description available.Chr09+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ6G025790No description available.chr6-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD10G022580No description available.10+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G015840papain family cysteine proteasechr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G11220No description available.scaffold_3-View
PPE_004G05680No description available.scaffold_4-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G076690Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA)%3B contains Interpro domain(s) IPR013128 Peptidase C1A%2C papainch02-View
SL03G006200Cathepsin B-like cysteine proteinase 5 (AHRD V1 **-* CPR5_CAEEL)%3B contains Interpro domain(s) IPR013128 Peptidase C1A%2C papainch03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G14490No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G05070similar to AT1G06260|cysteine proteinase, putativech1-1+View
TP4G16430similar to AT2G34080|cysteine proteinase, putativech4-6-View
TP2G10810similar to AT5G45890|SAG12 (SENESCENCE-ASSOCIATED GENE 12)ch2-4+View
TP1G25020similar to AT1G29080|peptidase C1A papain family proteinch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV12G02790name=GSVIVG01020698001;chr12+View
VV10G02000name=GSVIVG01021194001;chr10-View


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Gene id
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Description
Chromosome
Strand