PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: PT03G09310
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G14090	No description available.	Chr01	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G17905	Putative RING-H2 finger protein ATL4H. ATL4H; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). RING/U-box superfamily protein	4	-	View
AT5G46650	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G17920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). RING/U-box superfamily protein	5	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR01G09130	No description available.	A01	-	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV0G47350	No description available.	0085.scaffold00291	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM01596G01330	No description available.	CM3.5_scaffold01596	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_007G22340	No description available.	scaffold_7	+	View
CRU_004G16510	No description available.	scaffold_4	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0004G18150	No description available.	scaffold_4	+	View
EG0005G02490	No description available.	scaffold_5	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV5G33830	Probable RING-H2 finger protein ATL5G	LG5	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM09G33800	No description available.	Gm09	+	View
GM01G02130	No description available.	Gm01	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR04G18420	No description available.	Chr04	+	View
GR08G22570	No description available.	Chr08	+	View
GR07G03260	No description available.	Chr07	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT8G066740	zinc finger C C3HC4 type (RING finger) protein	chr8	+	View
MT5G030010	RING-H2 zinc finger protein	chr5	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS10G42390	zinc finger, C3HC4 type domain containing protein, expressed	10	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30054G00310	No description available.	30054	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL08G005110	Ring H2 finger protein (AHRD V1 -- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type	ch08	-	View
SL08G076800	Ring H2 finger protein (AHRD V1 -- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type	ch08	+	View
SL06G061250	Ring H2 finger protein (AHRD V1 -- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type	ch06	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST08G021430	RING finger protein (AHRD V1 -- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type	chr08	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0003G22420	No description available.	scaffold_3	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP4G17640	similar to AT2G35420\|zinc finger (C3HC4-type RING finger) family protein	ch4-6	-	View
TP7G16180	similar to AT4G17920\|zinc finger (C3HC4-type RING finger) family protein	ch7-4	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV02G02190	name=GSVIVG01013145001;	chr2	+	View