Anchorpoints

Gene id
PT03G08640
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT01G14810No description available.Chr01+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G01130No description available.scaffold_8-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G47010RNA helicase, putative Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G29150No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G04370No description available.Bvchr5.sca006-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G00210No description available.Chr10-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00021G01900No description available.CM3.5_scaffold00021+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G00830No description available.scaffold_8-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G02950No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G30970Regulator of nonsense transcripts 1 homolog (similar to)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM01G41110No description available.Gm01+View
GM11G32931No description available.Gm11-View
GM11G04310No description available.Gm11-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G21530No description available.Chr06-View
GR03G17950No description available.Chr03-View
GR04G18970No description available.Chr04+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G013820regulator of nonsense transcripts proteinchr5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G31340regulator of nonsense transcripts 1, putative, expressed7+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G05250No description available.scaffold_5+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29628G00350No description available.29628+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G007110ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7)%3B contains Interpro domain(s) IPR018999 RNA helicase UPF1%2C UPF2-interacting domainch08+View
SL08G077420ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7)%3B contains Interpro domain(s) IPR018999 RNA helicase UPF1%2C UPF2-interacting domainch08+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G022900ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domainchr08+View
ST08G006100ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domainchr08-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G23380No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G11810similar to AT5G47010|LBA1 (LOW-LEVEL BETA-AMYLASE 1)ch2-4+View


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Gene id
Species
Description
Chromosome
Strand