Anchorpoints

Gene id
PPE_006G10990
Organism
Prunus persica

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G08130DNA ligase 1 Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink).1-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G20760No description available.Bvchr9.sca005-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G21660No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00118G00060No description available.CM3.5_scaffold00118-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00080No description available.supercontig_1+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G07070No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00061G00460No description available.scaffold00061-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0010G03390No description available.scaffold_10-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G08510DNA ligase 1 (similar to)LG1+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G19880No description available.Gm11+View
GM12G08600No description available.Gm12-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G14600No description available.Chr03-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G043550No description available.chr3-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD11G012650No description available.11+View
MD03G009930No description available.3-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04182G00500No description available.scaffold04182-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G057340DNA ligase I C ATP-dependent proteinchr4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G00590No description available.Chr09+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29589G00310No description available.29589-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G066370DNA ligase (AHRD V1 ***- B9HQN9_POPTR)%3B contains Interpro domain(s) IPR000977 ATP-dependent DNA ligasech11-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G024190DNA ligase (AHRD V1 **** B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligasechr11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G34380No description available.scaffold_9-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G06770similar to AT1G08130|ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1)ch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G08870name=GSVIVG01031470001;chr6-View


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Gene id
Species
Description
Chromosome
Strand