Anchorpoints

Gene id
PPE_004G20600
Organism
Prunus persica

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PPE_004G01810No description available.scaffold_4-View
PPE_003G19660No description available.scaffold_3-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G03420No description available.scaffold_2-View
AL6G36470No description available.scaffold_6-View
AL7G20400No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G04620Ubiquitin-like superfamily protein autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).4-View
AT4G21980AUTOPHAGY 8A (APG8A); FUNCTIONS IN: APG8-specific protease activity, APG8 activating enzyme activity, Atg8 ligase activity; INVOLVED IN: autophagy; LOCATED IN: vacuolar lumen, autophagic vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G04620.2); Has 1531 Blast hits to 1529 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 726; Fungi - 172; Plants - 305; Viruses - 3; Other Eukaryotes - 325 (source: NCBI BLink). Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation. Ubiquitin-like superfamily protein4+View
AT1G62040autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2). Ubiquitin-like superfamily protein1+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV8G13090No description available.Bvchr8.sca004-View
BV0G55940No description available.0020.scaffold00069-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G04520No description available.Chr3-View
CL01G22060No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G05550No description available.CM3.5_scaffold00001-View
CM00007G04180No description available.CM3.5_scaffold00007+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00012G02960No description available.supercontig_12-View
CP00152G00200No description available.supercontig_152+View
CP00087G00730No description available.supercontig_87+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G31260No description available.scaffold_6-View
CRU_002G02830No description available.scaffold_2-View
CRU_007G18440No description available.scaffold_7-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00121G00140No description available.scaffold00121+View
CS00007G02830No description available.scaffold00007+View
CS00046G00880No description available.scaffold00046+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G29510No description available.scaffold_6+View
EG0005G30630No description available.scaffold_5-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G25370Autophagy-related protein 8C, Precursor (putative)LG3+View
FV3G01100Autophagy-related protein 8C, Precursor (putative)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G01650No description available.Gm17-View
GM12G10510No description available.Gm12-View
GM09G00630No description available.Gm09+View
GM06G46270No description available.Gm06+View
GM07G39090No description available.Gm07+View
GM15G11510No description available.Gm15+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G01350No description available.Chr11-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD17G008520No description available.17+View
MD03G017160No description available.3-View
MD11G018190No description available.11-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03241G00250No description available.scaffold03241-View
ME06598G00170No description available.scaffold06598+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G088230gaba-receptor-associated protein ubiquitin domain proteinchr2-View
MT2G023430gaba-receptor-associated protein ubiquitin domain proteinchr2+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G32800Autophagy-related protein 8A autophagy-related protein, putative, expressed7-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G00430No description available.Chr11+View
PT14G15380No description available.Chr14+View
PT04G01370No description available.Chr04-View
PT02G22880No description available.Chr02-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30064G00030No description available.30064+View
RC29842G00810No description available.29842-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G031650Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3)ch03-View
SL07G064680Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3)ch07+View
SL10G006270Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3)ch10-View
SL02G080590Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3)ch02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G008110Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_MICSR); contains Interpro domain(s) IPR004241 Light chain 3 (LC3)chr03-View
ST07G029130Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_MICSR); contains Interpro domain(s) IPR004241 Light chain 3 (LC3)chr07-View
ST02G023760Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_MICSR); contains Interpro domain(s) IPR004241 Light chain 3 (LC3)chr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G21430No description available.scaffold_6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G10630name=GSVIVG01037666001;chr19+View
VV12G10790name=GSVIVG01030430001;chr12+View
VV10G00990name=GSVIVG01012719001;chr10-View


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Gene id
Species
Description
Chromosome
Strand