Anchorpoints
- Gene id
- PPE_004G20600
- Organism
- Prunus persica
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_004G01810 | No description available. | scaffold_4 | - | View |
PPE_003G19660 | No description available. | scaffold_3 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G03420 | No description available. | scaffold_2 | - | View |
AL6G36470 | No description available. | scaffold_6 | - | View |
AL7G20400 | No description available. | scaffold_7 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT4G04620 | Ubiquitin-like superfamily protein autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink). | 4 | - | View |
AT4G21980 | AUTOPHAGY 8A (APG8A); FUNCTIONS IN: APG8-specific protease activity, APG8 activating enzyme activity, Atg8 ligase activity; INVOLVED IN: autophagy; LOCATED IN: vacuolar lumen, autophagic vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G04620.2); Has 1531 Blast hits to 1529 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 726; Fungi - 172; Plants - 305; Viruses - 3; Other Eukaryotes - 325 (source: NCBI BLink). Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation. Ubiquitin-like superfamily protein | 4 | + | View |
AT1G62040 | autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2). Ubiquitin-like superfamily protein | 1 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV8G13090 | No description available. | Bvchr8.sca004 | - | View |
BV0G55940 | No description available. | 0020.scaffold00069 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL03G04520 | No description available. | Chr3 | - | View |
CL01G22060 | No description available. | Chr1 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00001G05550 | No description available. | CM3.5_scaffold00001 | - | View |
CM00007G04180 | No description available. | CM3.5_scaffold00007 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00012G02960 | No description available. | supercontig_12 | - | View |
CP00152G00200 | No description available. | supercontig_152 | + | View |
CP00087G00730 | No description available. | supercontig_87 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_006G31260 | No description available. | scaffold_6 | - | View |
CRU_002G02830 | No description available. | scaffold_2 | - | View |
CRU_007G18440 | No description available. | scaffold_7 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00121G00140 | No description available. | scaffold00121 | + | View |
CS00007G02830 | No description available. | scaffold00007 | + | View |
CS00046G00880 | No description available. | scaffold00046 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G29510 | No description available. | scaffold_6 | + | View |
EG0005G30630 | No description available. | scaffold_5 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV3G25370 | Autophagy-related protein 8C, Precursor (putative) | LG3 | + | View |
FV3G01100 | Autophagy-related protein 8C, Precursor (putative) | LG3 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM17G01650 | No description available. | Gm17 | - | View |
GM12G10510 | No description available. | Gm12 | - | View |
GM09G00630 | No description available. | Gm09 | + | View |
GM06G46270 | No description available. | Gm06 | + | View |
GM07G39090 | No description available. | Gm07 | + | View |
GM15G11510 | No description available. | Gm15 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR11G01350 | No description available. | Chr11 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD17G008520 | No description available. | 17 | + | View |
MD03G017160 | No description available. | 3 | - | View |
MD11G018190 | No description available. | 11 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03241G00250 | No description available. | scaffold03241 | - | View |
ME06598G00170 | No description available. | scaffold06598 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT2G088230 | gaba-receptor-associated protein ubiquitin domain protein | chr2 | - | View |
MT2G023430 | gaba-receptor-associated protein ubiquitin domain protein | chr2 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS07G32800 | Autophagy-related protein 8A autophagy-related protein, putative, expressed | 7 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT11G00430 | No description available. | Chr11 | + | View |
PT14G15380 | No description available. | Chr14 | + | View |
PT04G01370 | No description available. | Chr04 | - | View |
PT02G22880 | No description available. | Chr02 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30064G00030 | No description available. | 30064 | + | View |
RC29842G00810 | No description available. | 29842 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G031650 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | ch03 | - | View |
SL07G064680 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | ch07 | + | View |
SL10G006270 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | ch10 | - | View |
SL02G080590 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO)%3B contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | ch02 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST03G008110 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_MICSR); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | chr03 | - | View |
ST07G029130 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_MICSR); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | chr07 | - | View |
ST02G023760 | Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_MICSR); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | chr02 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0006G21430 | No description available. | scaffold_6 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV19G10630 | name=GSVIVG01037666001; | chr19 | + | View |
VV12G10790 | name=GSVIVG01030430001; | chr12 | + | View |
VV10G00990 | name=GSVIVG01012719001; | chr10 | - | View |