PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: ME08301G00200
Organism: Manihot esculenta

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G11230	No description available.	scaffold_1	-	View
AL2G04740	No description available.	scaffold_2	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G61140	embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related	1	-	View
AT1G11100	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1).	1	-	View

Amborella trichopoda

Gene id	Description	Chromosome	Strand	Multiplicon
ATR_00003G03210	No description available.	scaffold00003	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR01G25840	No description available.	A01	-	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV8G09100	No description available.	Bvchr8.sca002	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL01G22910	No description available.	Chr1	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00007G03300	No description available.	CM3.5_scaffold00007	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00027G00880	No description available.	supercontig_27	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_002G03820	No description available.	scaffold_2	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00010G02660	No description available.	scaffold00010	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0004G05500	No description available.	scaffold_4	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV3G06370	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 (SMARCA3-like protein 3) (probable)	LG3	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM13G25310	No description available.	Gm13	-	View
GM15G07590	No description available.	Gm15	+	View
GM07G31180	No description available.	Gm07	+	View
GM13G31700	No description available.	Gm13	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR09G17100	No description available.	Chr09	-	View
GR10G15110	No description available.	Chr10	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ4G008460	No description available.	chr4	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT2G012830	SNF2 C helicase and zinc finger protein	chr2	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_004G03880	No description available.	scaffold_4	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT04G03770	No description available.	Chr04	+	View
PT11G04640	No description available.	Chr11	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC29917G00060	No description available.	29917	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G006570	DNA repair protein RAD5 (AHRD V1 *--- A8N3A4_COPC7)%3B contains Interpro domain(s) IPR000330 SNF2-related	ch03	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST03G007660	DNA repair protein RAD5 (AHRD V1 *--- C5FVY4_ARTOC); contains Interpro domain(s) IPR000330 SNF2-related	chr03	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0006G18930	No description available.	scaffold_6	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP2G03350	similar to AT1G61140\|EDA16 (embryo sac development arrest 16)	ch2-2	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV00G24110	name=GSVIVG01006339001;	chr10_random	+	View