Anchorpoints
- Gene id
- ME06512G00680
- Organism
- Manihot esculenta
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07012G00680 | No description available. | scaffold07012 | + | View |
ME07520G02230 | No description available. | scaffold07520 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G04500 | No description available. | scaffold_7 | + | View |
AL1G20790 | No description available. | scaffold_1 | - | View |
AL8G34310 | No description available. | scaffold_8 | + | View |
AL5G20700 | No description available. | scaffold_5 | + | View |
AL3G39110 | No description available. | scaffold_3 | - | View |
AL2G24460 | No description available. | scaffold_2 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G51060 | A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC) Lateral root primordium (LRP) protein-related STYLISH 1 (STY1); FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G66350.1); Has 244 Blast hits to 244 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 9; Plants - 179; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | 3 | + | View |
AT1G19790 | A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 7 | 1 | - | View |
AT5G66350 | SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid. Lateral root primordium (LRP) protein-related | 5 | - | View |
AT4G36260 | Lateral root primordium (LRP) protein-related A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves. STYLISH 2 (STY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, style development, auxin homeostasis, negative regulation of gibberellic acid mediated signaling pathway, stigma development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 4 (TAIR:AT2G18120.1); Has 2502 Blast hits to 2002 proteins in 224 species: Archae - 2; Bacteria - 961; Metazoa - 458; Fungi - 79; Plants - 348; Viruses - 38; Other Eukaryotes - 616 (source: NCBI BLink). | 4 | - | View |
AT1G75520 | SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | 1 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR01G21730 | No description available. | A01 | - | View |
BR06G14250 | No description available. | A06 | - | View |
BR07G12060 | No description available. | A07 | - | View |
BR09G32760 | No description available. | A09 | + | View |
BR03G55170 | No description available. | A03 | - | View |
BR01G02270 | No description available. | A01 | + | View |
BR07G02140 | No description available. | A07 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G08260 | No description available. | Bvchr1.sca001 | + | View |
BV6G16420 | No description available. | Bvchr6.sca002 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G14340 | No description available. | Chr8 | + | View |
CL01G20160 | No description available. | Chr1 | - | View |
CL05G19720 | No description available. | Chr5 | + | View |
CL07G10200 | No description available. | Chr7 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00007G09120 | No description available. | CM3.5_scaffold00007 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00006G01910 | No description available. | supercontig_6 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_007G03710 | No description available. | scaffold_7 | + | View |
CRU_005G16330 | No description available. | scaffold_5 | + | View |
CRU_001G18500 | No description available. | scaffold_1 | - | View |
CRU_002G21110 | No description available. | scaffold_2 | - | View |
CRU_003G31020 | No description available. | scaffold_3 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G04980 | No description available. | scaffold00002 | - | View |
CS00017G00530 | No description available. | scaffold00017 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G13080 | No description available. | scaffold_6 | - | View |
EG0009G20080 | No description available. | scaffold_9 | + | View |
EG0009G10480 | No description available. | scaffold_9 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G14390 | tRNA-dihydrouridine synthase 1-like (probable) | LG1 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM04G01125 | No description available. | Gm04 | - | View |
GM02G05830 | No description available. | Gm02 | - | View |
GM17G37410 | No description available. | Gm17 | - | View |
GM04G03000 | No description available. | Gm04 | + | View |
GM16G24510 | No description available. | Gm16 | - | View |
GM06G03030 | No description available. | Gm06 | + | View |
GM01G37590 | No description available. | Gm01 | - | View |
GM11G07710 | No description available. | Gm11 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR03G01180 | No description available. | Chr03 | - | View |
GR10G00680 | No description available. | Chr10 | + | View |
GR05G24710 | No description available. | Chr05 | - | View |
GR09G19730 | No description available. | Chr09 | + | View |
GR07G19810 | No description available. | Chr07 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ1G029970 | No description available. | chr1 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD02G012020 | No description available. | 2 | - | View |
MD12G015230 | No description available. | 12 | - | View |
MD15G018120 | No description available. | 15 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT8G076620 | zinc finger C LRP1 type protein | chr8 | + | View |
MT5G021130 | transcription factor C putative | chr5 | + | View |
MT1G023230 | zinc finger C LRP1 type protein | chr1 | - | View |
MT4G071110 | zinc finger C LRP1 type protein | chr4 | - | View |
MT3G112510 | transcription factor C putative | chr3 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS06G49830 | SHI, putative, expressed | 6 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G37970 | No description available. | scaffold_1 | - | View |
PPE_007G18440 | No description available. | scaffold_7 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT04G16060 | No description available. | Chr04 | - | View |
PT05G23420 | No description available. | Chr05 | - | View |
PT05G11820 | No description available. | Chr05 | - | View |
PT09G12160 | No description available. | Chr09 | - | View |
PT02G02850 | No description available. | Chr02 | + | View |
PT07G01750 | No description available. | Chr07 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G04790 | No description available. | 30170 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G062400 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch02 | + | View |
SL02G084680 | Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch02 | + | View |
SL04G080970 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch04 | - | View |
SL03G033680 | Short internode related sequence 5 (AHRD V1 -*-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch03 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST03G009380 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR006510 Zinc finger, Lateral Root Primordium type 1 | chr03 | + | View |
ST04G034360 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | chr04 | - | View |
ST02G027800 | Short internode related sequence 7 (AHRD V1 **-- D2KC77_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | chr02 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G07470 | No description available. | scaffold_2 | + | View |
TC0008G03510 | No description available. | scaffold_8 | - | View |
TC0001G02360 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G17600 | similar to AT1G19790|SRS7 (SHI-RELATED SEQUENCE 7) | ch1-1 | - | View |
TP5G30650 | similar to AT1G75520|SRS5 (SHI-RELATED SEQUENCE 5) | ch5-7 | - | View |
TP2G30370 | similar to AT5G66350|SHI (SHORT INTERNODES) | ch2-4 | - | View |
TP5G11150 | similar to AT3G51060|STY1 (STYLISH 1) | ch5-1 | - | View |
TP3G31560 | similar to AT2G18120|SRS4 (SHI-RELATED SEQUENCE 4) | ch3-6 | - | View |
TP7G34000 | similar to AT4G36260|STY2 (STYLISH 2) | ch7-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV04G01250 | name=GSVIVG01018845001; | chr4 | - | View |
VV18G09810 | name=GSVIVG01009812001; | chr18 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM05G15490 | No description available. | 5 | + | View |