Anchorpoints

Gene id
ME02264G00680
Organism
Manihot esculenta

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
ME08757G00380No description available.scaffold08757+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G26780No description available.scaffold_6+View
AL1G09260No description available.scaffold_1-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G09570phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1); Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337; Bacteria - 24139; Metazoa - 4; Fungi - 596; Plants - 4116; Viruses - 7; Other Eukaryotes - 1154 (source: NCBI BLink). Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. phytochrome A1-View
AT5G26710Glutamyl/glutaminyl-tRNA synthetase, class Ic Glutamyl/glutaminyl-tRNA synthetase, class Ic; FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic (InterPro:IPR004526), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (TAIR:AT1G25350.1); Has 14411 Blast hits to 14402 proteins in 2977 species: Archae - 262; Bacteria - 9488; Metazoa - 657; Fungi - 449; Plants - 238; Viruses - 0; Other Eukaryotes - 3317 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G06020No description available.A06-View
BR09G51140No description available.A09+View
BR09G03600No description available.A09+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G17600No description available.Chr3+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00025G00030No description available.CM3.5_scaffold00025+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00048G02300No description available.supercontig_48-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G23530No description available.scaffold_6+View
CRU_001G08490No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00102G00140No description available.scaffold00102+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G11630No description available.scaffold_8-View
EG0002G11170No description available.scaffold_2-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G03420Phytochrome A (putative)LG6+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G41210No description available.Gm19+View
GM03G38620No description available.Gm03+View
GM10G28170No description available.Gm10+View
GM20G22160No description available.Gm20+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G026430No description available.chr5-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD04G014900No description available.4+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G085150glutamyl-tRNA synthetasechr1-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G30850No description available.scaffold_6+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT13G00030No description available.Chr13+View
PT05G00120No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30128G03830No description available.30128-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G102410Glutaminyl-tRNA synthetase (AHRD V1 ***- A8BEZ0_GIALA)%3B contains Interpro domain(s) IPR004526 Glutamyl-tRNA synthetase%2C class Ic%2C archaeal/eukaryotic cytosolicch01-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G039330Glutaminyl-tRNA synthetase (AHRD V1 ***- E1F6V3_GIAIN); contains Interpro domain(s) IPR004526 Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolicchr01-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G32850No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G08170similar to AT1G09570|PHYA (PHYTOCHROME A)ch1-1-View
TP2G21350similar to AT5G26710|glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putativech2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G10540name=GSVIVG01031354001;chr14+View


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Gene id
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Description
Chromosome
Strand