Anchorpoints

Gene id
MD12G015390
Organism
Malus domestica

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
MD01G006230No description available.1+View
MD02G011890No description available.2-View
MD07G019500No description available.7+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G17970No description available.scaffold_8-View
AL7G35940No description available.scaffold_7-View
AL2G00770No description available.scaffold_2-View
AL2G01300No description available.scaffold_2+View
AL7G04410No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G41700One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 ubiquitin conjugating enzyme 8 (UBC8); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 28 (TAIR:AT1G64230.2); Has 10671 Blast hits to 10632 proteins in 401 species: Archae - 0; Bacteria - 4; Metazoa - 4624; Fungi - 2337; Plants - 1940; Viruses - 26; Other Eukaryotes - 1740 (source: NCBI BLink). ubiquitin conjugating enzyme 85+View
AT1G75440ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 18 (TAIR:AT5G42990.1); Has 8796 Blast hits to 8793 proteins in 382 species: Archae - 0; Bacteria - 2; Metazoa - 3895; Fungi - 1929; Plants - 1614; Viruses - 20; Other Eukaryotes - 1336 (source: NCBI BLink). ubiquitin-conjugating enzyme 161+View
AT4G36410ubiquitin-conjugating enzyme ubiquitin-conjugating enzyme 17 (UBC17); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: response to gibberellin stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 16 (TAIR:AT1G75440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ubiquitin-conjugating enzyme 174+View
AT1G64230ubiquitin-conjugating enzyme 28 ubiquitin-conjugating enzyme 28 (UBC28); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 10460 Blast hits to 10419 proteins in 398 species: Archae - 0; Bacteria - 4; Metazoa - 4543; Fungi - 2213; Plants - 1965; Viruses - 26; Other Eukaryotes - 1709 (source: NCBI BLink).1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G12350No description available.A09-View
BR01G30110No description available.A01+View
BR07G30750No description available.A07+View
BR03G55220No description available.A03+View
BR02G15870No description available.A02+View
BR03G40050No description available.A03+View
BR09G11740No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G07300No description available.Bvchr5.sca002+View
BV1G08640No description available.Bvchr1.sca001+View
BV6G16290No description available.Bvchr6.sca002-View
BV5G06520No description available.Bvchr5.sca002-View
BV3G02680No description available.Bvchr3.sca003-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G00500No description available.Chr1-View
CL06G07650No description available.Chr6+View
CL01G01940No description available.Chr1-View
CL05G01720No description available.Chr5+View
CL01G02360No description available.Chr1+View
CL05G09830No description available.Chr5+View
CL07G10150No description available.Chr7-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G01810No description available.CM3.5_scaffold00006+View
CM00005G06650No description available.CM3.5_scaffold00005-View
CM00005G07100No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00003G00420No description available.supercontig_3+View
CP00006G01800No description available.supercontig_6-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G21060No description available.scaffold_2+View
CRU_007G03640No description available.scaffold_7-View
CRU_007G32440No description available.scaffold_7-View
CRU_004G27690No description available.scaffold_4-View
CRU_002G00590No description available.scaffold_2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00028G00540No description available.scaffold00028-View
CS00017G01520No description available.scaffold00017+View
CS00002G04760No description available.scaffold00002+View
CS00009G01850No description available.scaffold00009+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G20190No description available.scaffold_9+View
EG0005G05500No description available.scaffold_5-View
EG0009G19600No description available.scaffold_9-View
EG0004G14250No description available.scaffold_4-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G03160Ubiquitin-conjugating enzyme E2 4 (similar to)LG5-View
FV7G37020SUMO-conjugating enzyme UBC9LG7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G01940No description available.Gm08-View
GM01G37480No description available.Gm01-View
GM18G46940No description available.Gm18-View
GM16G03940No description available.Gm16+View
GM07G07540No description available.Gm07+View
GM06G13020No description available.Gm06+View
GM11G07810No description available.Gm11+View
GM05G37650No description available.Gm05+View
GM09G39370No description available.Gm09+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G27130No description available.Chr08-View
GR09G19840No description available.Chr09-View
GR03G15730No description available.Chr03+View
GR01G07030No description available.Chr01-View
GR03G01220No description available.Chr03+View
GR02G12640No description available.Chr02-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G046180No description available.chr4+View
LJ2G029920No description available.chr2+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03741G00440No description available.scaffold03741+View
ME09657G00080No description available.scaffold09657+View
ME07520G02150No description available.scaffold07520+View
ME06512G00560No description available.scaffold06512-View
ME02658G01120No description available.scaffold02658+View
ME06089G00360No description available.scaffold06089-View
ME05280G00330No description available.scaffold05280+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G028920ubiquitin-conjugating enzymechr8+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS10G39120ubiquitin-conjugating enzyme, putative, expressed10-View
OS03G03130ubiquitin-conjugating enzyme, putative, expressed3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G38170No description available.scaffold_1-View
PPE_006G01320No description available.scaffold_6-View
PPE_007G18340No description available.scaffold_7-View
PPE_002G29330No description available.scaffold_2+View
PPE_005G11190No description available.scaffold_5-View
PPE_005G19340No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G11860No description available.Chr05+View
PT03G12970No description available.Chr03-View
PT05G23210No description available.Chr05+View
PT07G01870No description available.Chr07+View
PT14G08660No description available.Chr14-View
PT02G03080No description available.Chr02-View
PT01G09490No description available.Chr01-View
PT06G11020No description available.Chr06-View
PT01G10190No description available.Chr01+View
PT03G13620No description available.Chr03+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29634G00080No description available.29634+View
RC30170G04560No description available.30170+View
RC30190G04120No description available.30190-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G008220Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch08+View
SL10G012240Ubiquitin-conjugating enzyme (AHRD V1 ***- D2VN46_NAEGR)%3B contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzymech10+View
SL01G094810Ubiquitin-conjugating enzyme (AHRD V1 **** D2VN46_NAEGR)%3B contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzymech01-View
SL04G080810Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch04-View
SL02G084760Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034210Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr04-View
ST12G027200Ubiquitin-conjugating enzyme (AHRD V1 ***- E9CHE9_9EUKA); contains Interpro domain(s) IPR015580 RUB1 conjugating enzyme Ubc12chr12+View
ST08G009600Ubiquitin conjugating enzyme (AHRD V1 **** E9D4Y9_COCPO); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr08-View
ST03G024850Ubiquitin-conjugating enzyme E2 (AHRD V1 **** E9F1K0_METAN); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr03+View
ST02G027880Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B4FMX0_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G02510No description available.scaffold_1+View
TC0003G19240No description available.scaffold_3+View
TC0001G35410No description available.scaffold_1+View
TC0003G27750No description available.scaffold_3-View
TC0008G03300No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G34070similar to AT4G36410|UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)ch7-6+View
TP5G30590similar to AT1G75440|UBC16 (ubiquitin-conjugating enzyme 16)ch5-7+View
TP2G00510similar to AT1G64230|ubiquitin-conjugating enzyme, putativech2-1-View
TP7G00370similar to AT5G41700|UBC8 (UBIQUITIN CONJUGATING ENZYME 8)ch7-1-View
TP4G28090similar to AT2G46030|UBC6 (ubiquitin-conjugating enzyme 6)ch4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G06940name=GSVIVG01028729001;chr16-View
VV06G07340name=GSVIVG01025431001;chr6+View
VV04G01380name=GSVIVG01018860001;chr4-View
VV02G04240name=GSVIVG01019484001;chr2+View
VV18G09560name=GSVIVG01009784001;chr18-View
VV02G03390name=GSVIVG01019387001;chr2+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G03640Ubiquitin carrier protein (EC 6.3.2.-)1-View
ZM01G01520ubiquitin-conjugating enzyme E2 I1+View
ZM06G10730NEDD8-conjugating enzyme Ubc12-like6-View
ZM09G28450No description available.9-View
ZM03G28450No description available.3-View
ZM06G16030No description available.6+View


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Gene id
Species
Description
Chromosome
Strand